Gene Information

Name : yfeB (DNO_0643)
Accession : YP_001209552.1
Strain : Dichelobacter nodosus VCS1703A
Genome accession: NC_009446
Putative virulence/resistance : Virulence
Product : ABC iron transporter ATP-binding protein YfeB
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 687643 - 688488 bp
Length : 846 bp
Strand : -
Note : identified by match to protein family HMM PF00005

DNA sequence :
ATGAATACGCCACCAAAATTAACCGTTATCGATTTAAGCGTTATCTATCGCAATGGACATCAAGCACTGGAAGAAATTTC
TTTTGAATTAAGTGGTGGTTGCGTTTGCGCATTGATCGGCGTTAACGGTTCTGGAAAATCGACCTTATTTAACAGTATGA
TGGGAATCATAAAACCACAAAATGGTTGTGTTCGTATCAATGAATTATCCGTTCACCGTGCAATTTCTAAAAATTTATTG
GCATATGTACCGCAAACGGAACAAATTGATTGGCATTTTCCTATTTTGGTGCGCGATGTTGTGATGCAGGGACGTTTTGG
ACATATGGGATTTTTCCGCCGTCCGCGTTCAATTGATCGCAAAATTGTGGCAGATGCTTTAGAAAAATTAGCCATTAATG
ATTTAAGTGATCGTCAAATTGGTGAACTTTCTGGCGGACAGAAAAAACGCGTTTTTTTAGCCCGCGCGCTCGCGCAACAA
AGCCCCATTATTTTATTGGACGAACCTTTTACCGGCGTTGATGTCACTACAGAAACGGCAATCATGCAATTATTGCGGCA
ATTGCGCGCAAATGGTCATTTGATTATCGTATCAACGCATAATTTGGGCAGTGTGCCCGATTATTGCGATCAGGTTTTAA
TGATTAATCGCCGCTTAATCGTTGCGGGTGAAACAAAGCTTTATTTTACGCAAGAATATCTCGCTCAAACTTTTGGCGGT
ATTTTAAAAAATGTACATCTTTCGCAGCCATCAGGTTTACCGGTCACCATTATTTCCGATGATGAACGCGCCGCGATTTT
TTATGGCAAACGCGCCATTATTCAAACGCAGGAACAAGAAAAATGA

Protein sequence :
MNTPPKLTVIDLSVIYRNGHQALEEISFELSGGCVCALIGVNGSGKSTLFNSMMGIIKPQNGCVRINELSVHRAISKNLL
AYVPQTEQIDWHFPILVRDVVMQGRFGHMGFFRRPRSIDRKIVADALEKLAINDLSDRQIGELSGGQKKRVFLARALAQQ
SPIILLDEPFTGVDVTTETAIMQLLRQLRANGHLIIVSTHNLGSVPDYCDQVLMINRRLIVAGETKLYFTQEYLAQTFGG
ILKNVHLSQPSGLPVTIISDDERAAIFYGKRAIIQTQEQEK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 7e-68 52
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 6e-69 52
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 3e-69 52
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 3e-69 52
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 7e-68 52
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 2e-38 41
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 2e-38 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeB YP_001209552.1 ABC iron transporter ATP-binding protein YfeB BAC0440 Protein 1e-77 55
yfeB YP_001209552.1 ABC iron transporter ATP-binding protein YfeB BAC0350 Protein 2e-69 52
yfeB YP_001209552.1 ABC iron transporter ATP-binding protein YfeB BAC0400 Protein 3e-41 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeB YP_001209552.1 ABC iron transporter ATP-binding protein YfeB VFG0526 Protein 1e-69 52