Gene Information

Name : yfeD (DNO_0640)
Accession : YP_001209550.1
Strain : Dichelobacter nodosus VCS1703A
Genome accession: NC_009446
Putative virulence/resistance : Virulence
Product : ABC iron transporter permease YfeD
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 685989 - 686801 bp
Length : 813 bp
Strand : -
Note : identified by match to protein family HMM PF00950

DNA sequence : 
ATGTTTGATAATGCTTTTTTTCTACCGCTGACCTACCCTTTTATGCAACAGGCTTTATTGATTGCTTTGTTTATCAGTAG
TAGTTGCGCGCTCCTTTCGTGTTATTTGGTATTACGTGGTTGGTCGATGTTAGGCGATGCGATGGCGCATGCCATGACTT
TAGGCGTTGTTATTGCAATATTAATTGGCATTCCTATCAGTATTGGTGCTTTAGGAGCGGCGTTATTATGCGTTGTTTCA
ACAGATGCGTTGGATCAACAAACGCATTTACCCGCGGACAGTCTGCTCGGCATAGTTTTTTCCGGCATGATGGCATTGGG
CATGCTGCTTTACAGTATTTTTCAACCTGCCGAACCGTTAAGCAAAATATTATTTGGCAATATTTTAGGCATTCAAGCGA
TAGATTTTTGGCAAACGCTGCTGATAAGCATTGCCGTCATCATCGTTATTTTATTGAAATGGAAAGATTTTTTATTATAT
GTTTTTGATGAAAATCATGCCCATATCAGTGGGTTATCGCGGCAGCATTTGCGTTATACCTTATTAGTTTTAGTGGCATT
AACTGCTGTGGCGGCAATGCAAGCGGTTGGCGTTATTTTAATCGTTGCGATGCTGGTTGCGCCGGGGATAACGGGGCAAA
TGTGTTGCCGCCGGTTTTCAATGATGTTGATAGTTGCTGTTTTTTCGGCAATTTTAGCGAGTTTCAGCGGATTATTAGCC
AGTTTTTATTGGAACGCTTCGCCGGCAGCCTGCATTGTTTTAAGCCAAGGCATCATTTTCATGAGTGCGTGCATTTATCG
CGCGATGAGATAG

Protein sequence : 
MFDNAFFLPLTYPFMQQALLIALFISSSCALLSCYLVLRGWSMLGDAMAHAMTLGVVIAILIGIPISIGALGAALLCVVS
TDALDQQTHLPADSLLGIVFSGMMALGMLLYSIFQPAEPLSKILFGNILGIQAIDFWQTLLISIAVIIVILLKWKDFLLY
VFDENHAHISGLSRQHLRYTLLVLVALTAVAAMQAVGVILIVAMLVAPGITGQMCCRRFSMMLIVAVFSAILASFSGLLA
SFYWNASPAACIVLSQGIIFMSACIYRAMR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD NP_461785.1 permease Virulence SPI-1 Protein 6e-38 43
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 5e-38 43
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-37 42
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-37 42
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-37 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeD YP_001209550.1 ABC iron transporter permease YfeD BAC0442 Protein 4e-42 48
yfeD YP_001209550.1 ABC iron transporter permease YfeD BAC0352 Protein 3e-38 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeD YP_001209550.1 ABC iron transporter permease YfeD VFG0528 Protein 3e-38 43