Gene Information

Name : kdsB (DNO_0304)
Accession : YP_001209224.1
Strain : Dichelobacter nodosus VCS1703A
Genome accession: NC_009446
Putative virulence/resistance : Virulence
Product : 3-deoxy-D-manno-octulosonate cytidylyltransferase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1212
EC number : 2.7.7.38
Position : 323337 - 324071 bp
Length : 735 bp
Strand : +
Note : identified by match to protein family HMM PF02348; match to protein family HMM TIGR00466

DNA sequence :
ATGACGCCTGATATTCGTGTGGTGATTCCAGCGCGTTATGCTTCAACGCGTTTGCCGGCAAAACCGCTGGCTTTAATTGG
CGGCGTGCCGATGATTGTGCGCACCGCGCAGCAAGTGGCTCAAGCAGGTTTCCCTTATTGTGTGGCGTACGATGATGAAC
GTATTGGCGACGTTTTAGCCGCGCATCATATTCCTGCAATAAAAACGCGTTTTACACATGAAAATGGTACGCAGCGTTTG
AGTGAAGTCGTCATTGCGCGCGCGTGGACAGATGAAACGATTGTGGTTAACGTGCAAGGCGATGAGCCGTTATTACCGCC
CGATTTGATTACCACCGTTGCCCGTACGCTTATCGAGCATACTCAAGCCAGTGTGGCGACGCTGGCAACGGTTTGTGATG
CGCCTGAATCGCCCAATACCGTTAAAGTGGTGTGCGATTGTGCGGGTTATGCTTTATATTTTTCGCGCAGCGTGATGCCT
TACGTGCGCGATGCCGCGGCGCCGCCGGTTTCTTATTTGCGCCACATCGGCATTTATGCTTACCGCGTGCAATTATTGAA
ACGTTATCCGCAACTGGCGCCAACGCCTTTAGAACAAGCCGAAAAACTCGAGCAACTGCGTTTTTTGGAACACGGTTTTA
AAATTGCGGTTGCGCAAATTGATGAAGCGCCGCCTGCTGGTGTGGACAGTCCCGAAGATTTAGCGCGCGTGCAGGCATTA
TTCGTTCATGAATAA

Protein sequence :
MTPDIRVVIPARYASTRLPAKPLALIGGVPMIVRTAQQVAQAGFPYCVAYDDERIGDVLAAHHIPAIKTRFTHENGTQRL
SEVVIARAWTDETIVVNVQGDEPLLPPDLITTVARTLIEHTQASVATLATVCDAPESPNTVKVVCDCAGYALYFSRSVMP
YVRDAAAPPVSYLRHIGIYAYRVQLLKRYPQLAPTPLEQAEKLEQLRFLEHGFKIAVAQIDEAPPAGVDSPEDLARVQAL
FVHE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsU YP_854332.1 3-deoxy-manno-octulosonate cytidylyltransferase Not tested PAI I APEC-O1 Protein 2e-34 43
kpsU CAE85213.1 KpsU protein Virulence PAI V 536 Protein 3e-34 43
kpsU AAZ04469.1 CMP-KDO synthetase Virulence PAI I APEC-O1 Protein 2e-34 43