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Name : fimN (DNO_1126) Accession : YP_001210010.1 Strain : Dichelobacter nodosus VCS1703A Genome accession: NC_009446 Putative virulence/resistance : Virulence Product : type IV fimbrial biogenesis nucleotide binding protein FimN Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 1172401 - 1174095 bp Length : 1695 bp Strand : - Note : identified by match to protein family HMM PF00437; match to protein family HMM PF05157; match to protein family HMM TIGR02538 DNA sequence : ATGAGTGAGTATGATGAACTGATTGCCTATATGGTAAAAAATAAGGTGGCAACGCCTGAGCAGCTGAAGGAAGTACAAAT CAGCGTGCAGAAAAAACGGGGCAATTTTTTGCAACAGTTATTAAGCGATGGTTTGCTTGATGCCAGTAAATTGTCAAAAA TTAATCGGGAAGTTTATAACTTGCCGATCGTTGCTTTGCGTGAATTAAATATTCGTCGGGAATTAACAGCGCAGTTTAAA GAAGCGGTGGTGCGCAAACATACCGCAATGCCGGTTTATGCCAACGGCGGACGTTTATTTATCGCTACCATCGATCCCAA TAACCGCAGCATGCTGGAAGAGTTTAAATATCAAGGTAAATTTACTTCCGTTGAGCCGATTATCGCTAATCTTGACGCCA TCGAAGCCTTGATTGAAGAGCACTATGCAGGGCTCGGCGGCATGGACGATTTGTTTGATGATGAAACGGAAGAAAAAGAT TTAGATGCAATCAGTAATGCGTTAGGTGGGCTGGACGCAAACGAAGAAGAAGCGCCGGTGGTGCGTTTTGTAACGGGAAT GCTGTTAGATGCTATTCGAACTGGTGCTTCCGACTTGCACTTTGAACCTTATGAAACCACTTATCGCGTACGTTTTCGCC GTGACGGTGTATTGCAAGAAGTAGCAGCGCCGCCACCAAGCATCGCAACGCGTATTACCGCGCGTTTAAAAGTTATGGCG GATTTGGATATTGCCGAAAAACGGGTACCGCAGGACGGACGGATTAAGCTTTACGTATCCGATACAAAAGCCATCGACTT CCGGGTGAACTCGTTACCAACTTTGTGGGGTGAGAAAATTGTTCTGCGGATTTTGGACAGTTCCGCTGCCAAATTGAATA TTGAAATTCTTGGTTTTGAGCCTGATCAAAAACAACAATATTTAGATGCCATTTCTAAACCGCAGGGTTTGGTTTTGGTA ACGGGACCGACGGGATCCGGTAAAACCGTTTCTTTATACACCGGATTAAATATCCTCAATAAACCAACGGTTAATATTTC TACCGCTGAAGACCCTGTGGAAATTAACTTACCAGGAATTAATCAGGTTAACGTAAACCCGAAAACCGGTTTGGACTTCT CTGCCGCCTTGAAAGCGTTCTTACGGCAAGACCCTGACATCATCATGGTTGGGGAAATTCGGGATATCACTACTGCTGAA ATCGCGGTTAAAGCAGCACAAACAGGGCACTTGGTGTTATCAACTTTGCACACCAACGACGTGCCGCAAACCATTGCGCG TTTAGTTAATATCGGAATTGAACCTTACAACATTGCCGCTTCCGTAAACTTGATTATGGCGCAGCGGTTGGCAAGGCGTT TGTGCAATAACTGCAAAATTAGGGATCGTAAACACCACACTGAAGAATTGCTTGCTTTAGGTTTCCATGAAGAAGATTTG GACGATTTGAAAATTTATGCTCCTAAAGGGTGTGAACGCTGCAGTTATCAAGGTTATCGCGGTCGGGCGGGGATTTACCA AGTGGTTCCCATTTCGGAGGCGATTGCGGAATTGATTTTGAAAAATGCTTCCGCTGCCGAAATTGCAGAGCAATGTTTAA AAGAAGGCTATCTTGATTTGCGCCAAGCAGCGTTGAATAAAGTCAAGCAAGGGCTGACCAGTATCGAAGAAGTGTTACGT GTAACGAGCGAATAA Protein sequence : MSEYDELIAYMVKNKVATPEQLKEVQISVQKKRGNFLQQLLSDGLLDASKLSKINREVYNLPIVALRELNIRRELTAQFK EAVVRKHTAMPVYANGGRLFIATIDPNNRSMLEEFKYQGKFTSVEPIIANLDAIEALIEEHYAGLGGMDDLFDDETEEKD LDAISNALGGLDANEEEAPVVRFVTGMLLDAIRTGASDLHFEPYETTYRVRFRRDGVLQEVAAPPPSIATRITARLKVMA DLDIAEKRVPQDGRIKLYVSDTKAIDFRVNSLPTLWGEKIVLRILDSSAAKLNIEILGFEPDQKQQYLDAISKPQGLVLV TGPTGSGKTVSLYTGLNILNKPTVNISTAEDPVEINLPGINQVNVNPKTGLDFSAALKAFLRQDPDIIMVGEIRDITTAE IAVKAAQTGHLVLSTLHTNDVPQTIARLVNIGIEPYNIAASVNLIMAQRLARRLCNNCKIRDRKHHTEELLALGFHEEDL DDLKIYAPKGCERCSYQGYRGRAGIYQVVPISEAIAELILKNASAAEIAEQCLKEGYLDLRQAALNKVKQGLTSIEEVLR VTSE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 8e-88 | 44 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 6e-88 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| fimN | YP_001210010.1 | type IV fimbrial biogenesis nucleotide binding protein FimN | VFG0112 | Protein | 1e-139 | 53 |
| fimN | YP_001210010.1 | type IV fimbrial biogenesis nucleotide binding protein FimN | VFG0233 | Protein | 3e-119 | 51 |
| fimN | YP_001210010.1 | type IV fimbrial biogenesis nucleotide binding protein FimN | VFG1880 | Protein | 1e-134 | 49 |
| fimN | YP_001210010.1 | type IV fimbrial biogenesis nucleotide binding protein FimN | VFG0182 | Protein | 1e-84 | 46 |
| fimN | YP_001210010.1 | type IV fimbrial biogenesis nucleotide binding protein FimN | VFG2048 | Protein | 1e-87 | 45 |
| fimN | YP_001210010.1 | type IV fimbrial biogenesis nucleotide binding protein FimN | VFG1876 | Protein | 3e-84 | 44 |
