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Name : clpB (DNO_0108) Accession : YP_001209038.1 Strain : Dichelobacter nodosus VCS1703A Genome accession: NC_009446 Putative virulence/resistance : Virulence Product : ATP-dependent protease ClpB Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 114084 - 116657 bp Length : 2574 bp Strand : + Note : identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728 DNA sequence : ATGCAAATGAGTAAAAAATTTACAGCACGTTTTCAAGAAGCTTTATCGGCGGCGCAATCGCTCGCCGTGGGCAAAGATCA CGCATATATTGAGCCGCTGCATATTTTTTCGGCACTACTCGATCAAGAAGGCAGCAGCATTATTGCGATTGTGCAACGCG CGGGCGCGCAAATCGGCGCGCTTCGGCAAGCGGTGATGCAGGCGTTGGAACGTTTACCGCGGGTGAAAAATCCCACGGGT GATGTCAATATTTCGCCGGAAAGTATGCGGTTATTGAATTTATGCGATAAATACGCGCAACAAAATGGCGATGAATATAT TTCTTCCGAGCTCTTTTTGCGCGCGGTTTATGATGCAAAAGGGGATTTGGAGCAATTGTTGCGTGCCAACGGTTTGGAAA AAGCGGCGGTGGTGGCAGCAATTGATGCGGTGCGCGGCGGCGAGGCGGTGACAGATGAATACGCTGAAGATAAACGCGGT GCATTGAAAAAATATACCTTAGATGTTACGCAGCGCGCGTTAGATGGCAAAATCGATCCCGTCATTGGTCGCGATGAGGA AATTCGCCGCGCGATGCAAATTCTTCAACGTCGTAGTAAAAATAATCCCGTATTGATTGGCGAGCCGGGCGTCGGTAAAA CGGCAATTGTGGAAGGTTTGGCGCAAAGAATCGCGGATCGCGCTGTGCCGGAAAGTTTAAAAGGTAAACGTTTGTTATCT TTAGATTTAGCGGCGTTATTAGCCGGCACGAAATACCGCGGTGAATTTGAAGAACGGCTAAAAGCCGTTTTAGATGAAAT CACGAAAGCCGATGGGCAAATTATTTTATTTATCGATGAAATTCATACCATGGTTGGCGCGGGCAAAAGTGAAGGTTCTT TAGATGCCGGCAATATGCTCAAACCAGCGCTTGCGCGCGGCGATTTGCATTGCATTGGTGCAACGACTTTGGACGAATAT CGTCAATATATGGAAAAAGATGCGGCGCTGGAACGGCGTTTTCAAAAGGTGATCGTTGATGAACCCAGCGTTGAAGATAC GATTGCGATTTTGCGCGGTTTGCAGGAACGTTATGAAGTGCATCACGGCATTAATATTACGGATCCGGCGTTGGTGGCAG CGGCGCAGTTGTCGCATCGTTATATCAGCGGACGAAAATTGCCCGATAAAGCTATCGATTTGATGGACGAAGCCGCGGCG CAAATTCGCATGGAATTGGATAGTAAACCGGAAGTGATGGATAAAATTGATCGGCGGTTGATTCAATTGCAAATCGAACG TATGGCGCTGGAAAAAGAAACCGATGCGGCGTCGAAAAGACGTTTGAGCGATTTAGAAGCAGAAATTGCCGCGCAAGAAA AAGAATATGCCGATTTAGAAGAGATTTGGTTGGCAGAAAAAGCGGGAACGCAGGGCGCCGCCGAAATTAAGGAGCAATTA GATAAATTACGCGTGGAATTGGAAGCGGCAAAACGGCGCGGCGATTTTGCGCGCGCGAGCGAAATTCAATATGGTTTGAT TCCGGCAAAAGAAAAGCAATTGCTTGAAAATGAACAACAAACGGAACAACGTCCGCATCGTTTAATGCGTAATAAAGTGA CCGCTGAAGAAATCGCGGAAATCGTTTCCCGTTGGACGGGGATTCCGGTTGCCAAAATGATGGAAGGCGAAAAAGAGCGT TTATTGCATTTGGAAACGGTATTAAATGAACGCGTGGTAGGACAAAAAACGGCAGTTGAAGCGGTTGCCAACGCGATTCG GCGCAATCGCGCGGGATTATCTGACCCAAAACGTCCAATTGGTTCTTTTTTATTTTTGGGCCCGACGGGTGTTGGTAAAA CTGAATTATGCCGTACTTTGGCGCAATTTTTGTTTGATAGTGAAGAAAATATGGTGCGCATCGATATGAGCGAATTCATG GAAAAACATAGTGTTGCGCGTTTAATTGGGGCGCCTCCGGGTTATGTTGGCTATGATCAAGGCGGTTATTTAACGGAAGC CGTGCGGCGCAAACCGTATAGCGTGGTGTTATTTGATGAGGTGGAAAAAGCGCATAGCGATGTTTTTAATACGTTATTGC AGGTTTTAGATGAAGGTCGTTTGACTGATGGACAAGGTAGAACGGTCGATTTTCGTCACACGGTGATTATTATGACCTCC AATTTGGGCTCCGATATGATTCAATTGCTGGCGGAGAAATCGTATGAAGAGATGAAATCGGCAGTGATGGAGATTGTGAT GGCGCATTTCCGCCCCGAATTTATTAATCGTATTGATGAAGCGATTGTGTTTCACGGTTTGGCAAAGACGCATATGTATC GCATTGCGCAAATTCAATTGGAACGTTTGCGGCAACGTTTGCAAACGCGCGAATTACTGTTAAGCGTTGAAGAAGATGCG ATTAATCAATTGGTTGAATTGGGTTATGATCCGCTTTTTGGCGCCCGACCGTTGAAACGTGCGATTCAAAATCATATTGA AAATCCTTTGGCGCAGGCGTTGTTAGCAGGACAATATTTGCCGCAAAGTACAATTACGATTGGTTTTGATGGCACAAATT TTACTTTCCACTGA Protein sequence : MQMSKKFTARFQEALSAAQSLAVGKDHAYIEPLHIFSALLDQEGSSIIAIVQRAGAQIGALRQAVMQALERLPRVKNPTG DVNISPESMRLLNLCDKYAQQNGDEYISSELFLRAVYDAKGDLEQLLRANGLEKAAVVAAIDAVRGGEAVTDEYAEDKRG ALKKYTLDVTQRALDGKIDPVIGRDEEIRRAMQILQRRSKNNPVLIGEPGVGKTAIVEGLAQRIADRAVPESLKGKRLLS LDLAALLAGTKYRGEFEERLKAVLDEITKADGQIILFIDEIHTMVGAGKSEGSLDAGNMLKPALARGDLHCIGATTLDEY RQYMEKDAALERRFQKVIVDEPSVEDTIAILRGLQERYEVHHGINITDPALVAAAQLSHRYISGRKLPDKAIDLMDEAAA QIRMELDSKPEVMDKIDRRLIQLQIERMALEKETDAASKRRLSDLEAEIAAQEKEYADLEEIWLAEKAGTQGAAEIKEQL DKLRVELEAAKRRGDFARASEIQYGLIPAKEKQLLENEQQTEQRPHRLMRNKVTAEEIAEIVSRWTGIPVAKMMEGEKER LLHLETVLNERVVGQKTAVEAVANAIRRNRAGLSDPKRPIGSFLFLGPTGVGKTELCRTLAQFLFDSEENMVRIDMSEFM EKHSVARLIGAPPGYVGYDQGGYLTEAVRRKPYSVVLFDEVEKAHSDVFNTLLQVLDEGRLTDGQGRTVDFRHTVIIMTS NLGSDMIQLLAEKSYEEMKSAVMEIVMAHFRPEFINRIDEAIVFHGLAKTHMYRIAQIQLERLRQRLQTRELLLSVEEDA INQLVELGYDPLFGARPLKRAIQNHIENPLAQALLAGQYLPQSTITIGFDGTNFTFH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 1e-100 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | YP_001209038.1 | ATP-dependent protease ClpB | VFG0079 | Protein | 1e-161 | 46 |
| clpB | YP_001209038.1 | ATP-dependent protease ClpB | VFG2084 | Protein | 4e-104 | 42 |
