|
Name : BRADO1006 (BRADO1006) Accession : YP_001203158.1 Strain : Bradyrhizobium sp. ORS278 Genome accession: NC_009445 Putative virulence/resistance : Unknown Product : peptide ABC transporter ATP-binding protein Function : - COG functional category : R : General function prediction only COG ID : COG4172 EC number : - Position : 1073433 - 1075070 bp Length : 1638 bp Strand : + Note : Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pt : transporter DNA sequence : ATGGATGCGATGACCCAGCCGCTGTTGTCGGTCAGCGATCTCTCGGTCGCCTTTCACCAGGGCGGCCGCGCCTCGACCGC GGTCGACCACGTCTCGTTCGACATCAAGCGCGGCGAATGCGTCGCGCTGGTCGGCGAGTCAGGCTCGGGGAAGTCCGTCA GTGCGCTCTCCGTGCTGAAGCTGCTGCCGTATCCGGTTGCCTCGCATCCCTCCGGCAGCATCCGCTTCAAGGGGCGCGAT CTGCTGCCGCTGTCCGAGGGCGAGATGCGCGGCATCCGCGGCAGCGACATCTCGATCATCTTCCAGGAGCCGATGACCTC GCTCAATCCGCTGCACACGATCGAGCGGCAGATCAGCGAGATCCTGCATCTGCACAAGCCGATCTCGGGCAGCGCCGCGC GTACGCGCGTGCTCGAGCTGCTCACCCAGGTCGGCATTCCCGAGCCCGAGACGCGGCTCGGCAGCTATCCGCACCAGCTC TCCGGCGGCCAGCGTCAGCGCGTGATGATCGCGATGGCGCTCGCCAACGAGCCGGATCTCCTGATCGCCGACGAGCCGAC CACCGCGCTCGACGTCACCGTGCAGGCGCAGATCCTGGCGCTACTCGCCGACATCCGCGCGCGGCTCGGGATGAGCCTCC TCTTCATCACACATGATCTCGGCATCGTCCGGCGCATCGCCGACCGCGTCTGCGTCATGAATGGCGGCAAGATCGTCGAG CAGGGCCCGGTCGAGCAGGTGTTCACCGCGCCACAGCATCCCTACACCAAGGCGCTGCTCGCCGCCGAGCCGAAGCCAGA TCCCGCCCCGCCGCGGCCCGATCAGCCGGTCGTGATGCAGGCGAAGGACCTGAAGGTCTGGTTTCCGATCAAGCGCGGCC TGTTCCGCTCCACCGTTGGCCATATCAAGGCCGTCGACGGCGTCAGCGTCGCCGTGCGCAAGGGCGAGACGCTCGGCGTT GTCGGCGAGTCCGGCTCCGGCAAGACCACGCTCGGGCTGGCGCTGCTGCGGCTCATCTCCTCCGACGGACCGATCGTGTT TCTGGGCAAGGAGATCCAGGGCCTGAGCTTCAAGGAAGTCCGCCCGTTCCGCCGCGACATGCAGATCGTCTTCCAGGACC CGTTCGGTTCGCTCAGTCCGCGCATGTCGGTCGGCGACATCATCGCGGAAGGCCTGAGCGTGCATCAGCCTGACTTGTCG GAGGAGGCGCGCGAGGCCAAGGTCGTCAAGGCGCTCACCGATGTCGGCCTCGATCCGGCAACCCGCTTCCGCTATCCGCA CGAATTCTCCGGCGGCCAGCGCCAGCGCATCTCGGTCGCCCGCGCCGTCGTGCTGGAGCCGTCCTTCGTCGTGCTCGACG AGCCGACCTCGGCGCTCGACATGCTGTTCCAGGCGCAGATGGTCGAGCTCCTGCGCGAGCTGCAGCGCAAGCGCGAGCTG ACCTACATGTTCATCTCCCACGATCTGCGCGTCGTCGCCGCGCTGGCGAGCCATCTCATCGTGATGCGCCACGGCAAGGT GGTCGAGGAGGGCCCCGCCGCGCAATTGTTCAAGGCGCCGAAGACGGACTACACGCGCGCGCTGTTCGCCGCGGCGTTCA GGAACGAGACCGCGGGGAACGGCGCTGCGGCGAGCTGA Protein sequence : MDAMTQPLLSVSDLSVAFHQGGRASTAVDHVSFDIKRGECVALVGESGSGKSVSALSVLKLLPYPVASHPSGSIRFKGRD LLPLSEGEMRGIRGSDISIIFQEPMTSLNPLHTIERQISEILHLHKPISGSAARTRVLELLTQVGIPEPETRLGSYPHQL SGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILALLADIRARLGMSLLFITHDLGIVRRIADRVCVMNGGKIVE QGPVEQVFTAPQHPYTKALLAAEPKPDPAPPRPDQPVVMQAKDLKVWFPIKRGLFRSTVGHIKAVDGVSVAVRKGETLGV VGESGSGKTTLGLALLRLISSDGPIVFLGKEIQGLSFKEVRPFRRDMQIVFQDPFGSLSPRMSVGDIIAEGLSVHQPDLS EEAREAKVVKALTDVGLDPATRFRYPHEFSGGQRQRISVARAVVLEPSFVVLDEPTSALDMLFQAQMVELLRELQRKREL TYMFISHDLRVVAALASHLIVMRHGKVVEEGPAAQLFKAPKTDYTRALFAAAFRNETAGNGAAAS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| oppDF2 | YP_005681814.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 5e-73 | 43 |
| oppDF2 | YP_005683914.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 5e-73 | 43 |
| cpfrc_01561 | YP_003783961.1 | hypothetical protein | Not tested | PiCp 6 | Protein | 5e-73 | 43 |
| oppDF2 | YP_005686002.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 5e-73 | 43 |
| dppD | YP_005160017.1 | putative peptide ABC transport system ATP-binding protein | Not tested | Not named | Protein | 2e-80 | 42 |
