Gene Information

Name : BRADO5154 (BRADO5154)
Accession : YP_001207065.1
Strain : Bradyrhizobium sp. ORS278
Genome accession: NC_009445
Putative virulence/resistance : Virulence
Product : UDP-glucose/GDP-mannose dehydrogenase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0677
EC number : 1.1.1.132
Position : 5359006 - 5360319 bp
Length : 1314 bp
Strand : -
Note : Evidence 2b : Function of strongly homologous gene; PubMedId : 7961465; Product type e : enzyme

DNA sequence : 
ATGCCTCCGAAACGACCGGAATATCAATTTATGTCTCATGGCCGGAAGATTGCGGTGATAGGCCTTGGTTACGTCGGCCT
GCCGGTCGCCGCGGCGTTCGCGCGCGCCGGCTGCCCGGTGATCGGATTCGACATCGATGCTGCCAGGGTCGCCGAGCTGA
GGGACGGCAGGGACCGCACCTGTGAGGTCGAGGCCGCCGATCTTAAGCGGCCCGGCCTGCGCTTCACCAGCGATCCGGCT
GACATGGCTGCGGCCGATTTCTTCATTGTCACCGTCCCGACCCCGATCGACAGTGCTCGCCGGCCCGATTTGAGCGCAAT
GCGCTCCGCCACGCGCACCGTGAGGGCGGTGCTGAAGCGCGGCGACATCGTGGTCTATGAGTCGACGGTGTATCCTGGCG
CGGTCGAGGAGGACTGTGTTCCGCTGCTGGAGAGCGGCTCCGAGCTGAAGGCCGGCCTTGATTTCAACGTCGGCTACTCG
CCGGAGCGCATCAATCCGGGCGACAAGACGCATCGCTTCGAGACGATCACCAAGGTCGTCTCGGCACAGAATCCGCAGAC
GCTGCAGATCGTCGCCGAGGTCTACGGATCAGTGGTCAAAGCCGGTATTCATCGCGCGCCCTCGATCAGGGTTGCCGAGG
CTGCGAAGGTGATCGAGAACACGCAACGCGACCTCAACATCGCCTTCATGAACGAGCTCTCGCTGATCTTCCAGGCGCTG
GAGATCGACACCGGCGACGTGCTCGCGGCGGCCGCGACCAAGTGGAACTTCCTGCCGTTCACGCCGGGCCTCGTCGGCGG
ACACTGCATCGGCGTCGATCCCTATTATCTCACTTATCGCGCCGAGAAGGCGGGCTATCATCCCGAGGTGATCCTGGCGG
GCCGTCGGATCAATGACGAGATGGGCCGGCGCATCGCGCGCGAATGCATCCGCGGACTCCTGAAGCGGAAGGGGCGCAGC
GGCGTCGTGACCATTCTCGGCATGACGTTCAAGGAGAACGTGCCCGACATTCGCAATTCGCGGGTGATCGACATCATCAG
TGAGTTGCAGTCGTTTGGTATCGACGTTCAGGTGGCCGATCCCCTGGCCGATGCCGCGGCCGTGCACGAGGAGTATGGGA
TTGCCCTGACGGCGGCCGAGGCGCTGCGCCCGGCCGACGCGGTCGTGCTCGCCGTGTCGCATGATCAGTTCCTCGCCGGC
GGCTGGCCGCTGGTGCAGGGGCTGCTGCGCGAGGGGAGCGGCCTCGTACTCGATGTCAAGATGAAGCTCGACCGCGCGAG
CAAACCCGGCGCCATCGAGCTGTGGCGGCCCTGA

Protein sequence : 
MPPKRPEYQFMSHGRKIAVIGLGYVGLPVAAAFARAGCPVIGFDIDAARVAELRDGRDRTCEVEAADLKRPGLRFTSDPA
DMAAADFFIVTVPTPIDSARRPDLSAMRSATRTVRAVLKRGDIVVYESTVYPGAVEEDCVPLLESGSELKAGLDFNVGYS
PERINPGDKTHRFETITKVVSAQNPQTLQIVAEVYGSVVKAGIHRAPSIRVAEAAKVIENTQRDLNIAFMNELSLIFQAL
EIDTGDVLAAAATKWNFLPFTPGLVGGHCIGVDPYYLTYRAEKAGYHPEVILAGRRINDEMGRRIARECIRGLLKRKGRS
GVVTILGMTFKENVPDIRNSRVIDIISELQSFGIDVQVADPLADAAAVHEEYGIALTAAEALRPADAVVLAVSHDQFLAG
GWPLVQGLLREGSGLVLDVKMKLDRASKPGAIELWRP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cap1L AAA64651.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 3e-110 55
tviB NP_458740.1 Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 1e-95 51
tviB NP_807945.1 VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 1e-95 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BRADO5154 YP_001207065.1 UDP-glucose/GDP-mannose dehydrogenase VFG0431 Protein 4e-96 51