|
Name : BRADO3960 (BRADO3960) Accession : YP_001205942.1 Strain : Bradyrhizobium sp. ORS278 Genome accession: NC_009445 Putative virulence/resistance : Unknown Product : ABC transporter ATP-binding protein Function : - COG functional category : R : General function prediction only COG ID : COG1123 EC number : - Position : 4142541 - 4144175 bp Length : 1635 bp Strand : + Note : Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pt : transporter DNA sequence : ATGAGTTCGCCCGATCCCATTCTCACCGTCGACCGTCTGAGCGTCCGCCTGCCCAAGGGCGCGGACCGCGTCCATGCGAT CTCCGAGGTCTCGCTGTCGATTGCCGAAAACGAGATCGTCTGCATCGTCGGTGAATCCGGCTCCGGCAAGTCGATGATGG CGAACGCCATCATGCGGCTGCTGCCCGACGGCGTGACCACCGACGGCGGACGCCTGCTGTTCGCCGGCCGCGACCTGTGC ACCGCCTCCGCCGCCGACATGCGCGGCATTCGCGGCGCCGAGATCGCAATGGTGTTCCAGGAGCCGATGACAGCGCTCAA CCCGCTGCGGACGATCGGCGATCAGATCGGCGAGATGCTGGAGATCCACACCGGGCTGGCCAAGGCCGAGATCAGATCGC GCGTCGCATCGCTCCTGTCGGACGTCAACATTCCCGATCCGTCGCGCGCGGCCAAGGCCTATCCGCACGAGCTCTCCGGC GGCCAGCGCCAGCGCGCGATGATCGCCATGGCGCTCGCGCTCGATCCGAAGCTGTTGATCGCGGACGAGCCGACCACGGC GCTCGACGTGACCACGCAGGCGCAGATCCTCAAGCTGATCCGCGAGTTGCAGCAGCGGCGCGGGACTGCGGTGCTGTTCA TCACTCACGATTTCGGTGTCGTGGCCGAGATGGCCGACCGCGTCGTTGTGATGCAGCACGGTGTCGTTGTCGAGCACGGC CCGGCACGCGACGTGCTGCGCAACCCGCAGCACCCGTATACGCGGCAACTGATCGCTGCTGTCCCTCCCGTCGCAGCGCC GCCTCCCCGGCAACTATCCGGCGAGACCATCCTCGCGCTGTCCGGCGTGACCAAGACCTACCGCACCGGGGGTTTCCTCG GTCGCGGCGAGCGCGTCACTCACGCCGTCAAGGATGTCTCGCTGACGCTGCCCAAGGGCGCGACGCTCGGCATCGTCGGC GAATCCGGCTCCGGCAAGTCGACGCTCGCCCGCTGCATCATCCGCCTGCTCGATCCCGATGCCGGATCGATCGTGCTCGA AGGCCAGGACTGGGCGCGTCTGTCGCGCAGCGAGATCCGCGGCCGTACCCAACAGATGCAGATGGTGTTCCAGGACCCGT TCGCCTCGCTCAATCCTCGCCGCAAGGCCGTCGAGCTCGTCGCGCAGGGGCCGATCGTCCACGGCACGCCGCGCGATCAG GCGCTCGCCGAGGCCCGTGAGCTGTTCGGCCTGGTGGGCCTCGATCCCGCCGCCGCCGAGCGCTTCCCGCACGAATTCTC CGGGGGTCAGCGCCAGCGCATTGGCCTTGCGCGCGCACTCGCGCTGAAACCTACGGTGCTGGTCGCGGACGAGCCGGTCT CGGCGCTCGACGTCTCCGTGCAGGCGCAGGTTCTACGCCTGCTCACCGACCTGCGCGCCCGGCTAGGCCTGTCCATCATC TTCATCACCCATGACCTGCGTGTGGCCGCGCAGATCTGCGATCTCGTCGCCGTGATGAAGGACGGCGCTGTCGTGGAGCA CGGCGCGACGAGCGACGTGTTCGGCAGCCCCAGGCATTCCTACACGCAGGCCCTGCTCGCGGCCATTCCGGGCGGCGACT TCGCCCGGACCTCCATCGCTGAGGCCAAAGGCTGA Protein sequence : MSSPDPILTVDRLSVRLPKGADRVHAISEVSLSIAENEIVCIVGESGSGKSMMANAIMRLLPDGVTTDGGRLLFAGRDLC TASAADMRGIRGAEIAMVFQEPMTALNPLRTIGDQIGEMLEIHTGLAKAEIRSRVASLLSDVNIPDPSRAAKAYPHELSG GQRQRAMIAMALALDPKLLIADEPTTALDVTTQAQILKLIRELQQRRGTAVLFITHDFGVVAEMADRVVVMQHGVVVEHG PARDVLRNPQHPYTRQLIAAVPPVAAPPPRQLSGETILALSGVTKTYRTGGFLGRGERVTHAVKDVSLTLPKGATLGIVG ESGSGKSTLARCIIRLLDPDAGSIVLEGQDWARLSRSEIRGRTQQMQMVFQDPFASLNPRRKAVELVAQGPIVHGTPRDQ ALAEARELFGLVGLDPAAAERFPHEFSGGQRQRIGLARALALKPTVLVADEPVSALDVSVQAQVLRLLTDLRARLGLSII FITHDLRVAAQICDLVAVMKDGAVVEHGATSDVFGSPRHSYTQALLAAIPGGDFARTSIAEAKG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| oppDF2 | YP_005681814.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 1e-78 | 46 |
| oppDF2 | YP_005683914.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 1e-78 | 46 |
| cpfrc_01561 | YP_003783961.1 | hypothetical protein | Not tested | PiCp 6 | Protein | 1e-78 | 46 |
| oppDF2 | YP_005686002.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 1e-78 | 46 |
| dppD | YP_005160017.1 | putative peptide ABC transport system ATP-binding protein | Not tested | Not named | Protein | 2e-97 | 44 |
