|
Name : BRADO1293 (BRADO1293) Accession : YP_001203429.1 Strain : Bradyrhizobium sp. ORS278 Genome accession: NC_009445 Putative virulence/resistance : Virulence Product : general secretion pathway protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 1385256 - 1386869 bp Length : 1614 bp Strand : + Note : Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pt : transporter DNA sequence : ATGAGCTCGACTTCTCCTTTTCGACTGGCCGACGAAGACGGTGAGGTGAGATCGTCGCAGGGCGCCGATCCCGAATCTCC CGACTTTGCCGACGCGATCGCGCGGCAGCTCGGCCTGCCGCGGATCGGGCTGGCCGGGTTGCTCGCGGCCAAGCCGCTGA CCGAGCAGTTTTCGCGGCGCTTTCTCCGGGAGACGGCGGTCTTTCCGTTTCAATCGGCCGACCGTGAGCCGTGTCTCGCG GTGGCAGATCCGCGCGATAGTGCGACGGCGCGCGCCGCGGAGCTCGTGTTCGGCGGACCGGTCGCGCTGGTGGTGGCCTC TGCGGAGGATATCGGCACCGCGCTGAATCAGCTTGTTGGCGATGACGATGCGCCCGCCCGCAGCGAGACGGGTGAGCCGC AGCTGCGCGAGGACGATATCGAGAGTCTGCGCGACCTTGCCACCGGCGCGCCGGTGGTGCGCGCCGTCAACGATCTGTTC GAGCAGGCGGTGGAGCTGCGCGCCAGCGACATTCATGTCGAGGCGATGCGAAGCGGCTTGTCGATCCGGATGCGCGTGGA CGGCCTGCTGAAGCCGGTCGCGGGGCCTTCGGGCGTGCTGCCCCGGGCCGTGATCTCGCGCATCAAGATCGTCGCCGGCC TGAACATTGCGGAACGTCGGCTTCCTCAGGATGGCGCCGCGCGGCTGCGTGTCGGCCGCCACGAGCTGGACGTCCGTGTC GCCGTGATGCCCACGCAGCATGGCGAATCGGCGGTGATCCGGCTGCTGCCGAAGGACCGCGGACTGCTGTCGATCGAGAA GCTGGGCTTTGCTCCTCACGACGATCGAACGCTGCGCCGGCTGCTGGCGCTGCCGCATGGCATGATCGTGATCTGCGGGC CGACAGGCAGCGGCAAGACCACCACGTTGGCGACCGCGCTGTCGATCCTCAACGAGCCGACACGCAAGATCCTCACCATC GAGGATCCCGTGGAATACGAGATCCCCGGAATCAACCAGTCGCAGGTCAAGCCTGCCGTCGGGTTGACGTTCGCGTCCGC GCTGCGATCCTTCGTGCGTCAGGACCCCGACGTCATCATGGTCGGCGAAGTTCGCGATAGTGAGACGGCTCACGTCGCGG TCCATGCCGCGCTGACGGGTCACCTGGTGCTTACCACGCTGCACACCGAGAACGCGGCGGCGGCCGTGCCGCGGCTGCTC GATCTCGGCGTCGAGGACTTCCTGCTGCGTTCGACGCTCCGGGCGGTGATCGCGCAGCGGCTGGTGCGCAAACTATGCGT GCGGTGCAGGTCCTCTCATCTGTTGAGCGCCGACGATCTCTCCGCAGATCCGCGATATGCCGCGGTCGGCTTCGATGTCG GCGAAACCGTCTACATGCCGGCGGGCTGCGAGAGCTGCGGCGGGACAGGCTATCGCGGCCGTCTCGGCATCTTCGAGGTC CTGGAGCTCGACCAGGACATCCGGTCGCTGATCCAGGGTACGACTGACGCCGCAATGATCGATCGCAGCGCCATTCGCAA CGGGATGACCACGATGCTCGATGATGGCGTTGCGAAATGCCGGGCCGGCGCGACGTCGGTCGCGGAAGTCTTGCGCGTCA CGACGCTGCGGTGA Protein sequence : MSSTSPFRLADEDGEVRSSQGADPESPDFADAIARQLGLPRIGLAGLLAAKPLTEQFSRRFLRETAVFPFQSADREPCLA VADPRDSATARAAELVFGGPVALVVASAEDIGTALNQLVGDDDAPARSETGEPQLREDDIESLRDLATGAPVVRAVNDLF EQAVELRASDIHVEAMRSGLSIRMRVDGLLKPVAGPSGVLPRAVISRIKIVAGLNIAERRLPQDGAARLRVGRHELDVRV AVMPTQHGESAVIRLLPKDRGLLSIEKLGFAPHDDRTLRRLLALPHGMIVICGPTGSGKTTTLATALSILNEPTRKILTI EDPVEYEIPGINQSQVKPAVGLTFASALRSFVRQDPDVIMVGEVRDSETAHVAVHAALTGHLVLTTLHTENAAAAVPRLL DLGVEDFLLRSTLRAVIAQRLVRKLCVRCRSSHLLSADDLSADPRYAAVGFDVGETVYMPAGCESCGGTGYRGRLGIFEV LELDQDIRSLIQGTTDAAMIDRSAIRNGMTTMLDDGVAKCRAGATSVAEVLRVTTLR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 9e-74 | 46 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 7e-74 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| BRADO1293 | YP_001203429.1 | general secretion pathway protein E | VFG2426 | Protein | 3e-69 | 48 |
| BRADO1293 | YP_001203429.1 | general secretion pathway protein E | VFG1876 | Protein | 2e-76 | 46 |
| BRADO1293 | YP_001203429.1 | general secretion pathway protein E | VFG2048 | Protein | 4e-74 | 46 |
| BRADO1293 | YP_001203429.1 | general secretion pathway protein E | VFG0182 | Protein | 2e-73 | 46 |
