Gene Information

Name : SSU05_0922 (SSU05_0922)
Accession : YP_001198287.1
Strain : Streptococcus suis 05ZYH33
Genome accession: NC_009442
Putative virulence/resistance : Unknown
Product : translation elongation factor (GTPases)
Function : -
COG functional category : J : Translation, ribosomal structure and biogenesis
COG ID : COG0480
EC number : -
Position : 892240 - 894174 bp
Length : 1935 bp
Strand : -
Note : -

DNA sequence :
ATGGAGGAAAATCACATGAAAATTATTAATATTGGAGTTTTAGCTCATGTTGATGCAGGAAAAACTACCTTAACAGAAAG
CTTATTATATAACAGTGGAGCGATTACAGAATTAGGAAGCGTGGACAAAGGTACAACGAGGACGGATAATACGCTTTTAG
AACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTCAGTGGGAAAATACGAAGGTGAACATCATAGACACG
CCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAGATGGAGCAATTCTACTGATTTCTGCAAA
AGATGGCGTACAAGCACAAACTCGTATATTATTTCATGCACTTAGGAAAATGGGGATTCCCACAATCTTTTTTATCAATA
AGATTGACCAAAATGGAATTGATTTATCAACGGTTTATCAGGATATTAAAGAGAAACTTTCTATGGAAATTATAATCAAA
CAGAAAGTAGAGCTGCACCCTAATATGTGTGTGATGAGCTGTACGGAACCTGAGCAATGGGATGTGGTAATAGAAGGAAA
TGATGACCTTTTAGAGAAATATATGTCCGGTAAATCATTAGAAGCATTAGAACTCGAACAAGAGGAAATCAGAAGATTTC
AGAATTGCTCCTTGTACCCTGTTTATCATGGAAGCGCAAAAAGCAACATAGGGATTGAGCAGCTTATAGAAGTGATAACG
AATAAATTTTATTCATCAACATACAGAAAGAAGTCTGAACTTTGCGGAAATGTCTTCAAAATTGAATATTCGGAAGAAAG
ACAACGTCTTGCATATGTACGCCTTTATGGCGGAATCCTGCATTTGCGGGATTCGGTTAGAATATCGGAAAAGGAAAAAA
TAAAAATTACAGAAATGTATACTTCAATAAATGGTGAATTATGTAAAATTGATAAGGCTTATTCCGGGGAAATTGTTATT
TTGCAAAATGAGTTTTTGAAGCTAAATAGTGTTCTTGGAGATACAAAGCTATTGCCACAGAGAGAGAGAATTGAAAATCC
GCTCCCTCTGCTGCAAACAACTGTTGAACCGAGCAAACCTCAACAAAGGGAAATGTTACTTGATGCACTTTTAGAAATCT
CCGACAGTGACCCGCTTCTACAATATTATGTGGATTCTACGACACATGAAATTATACTTTCTTTCTTAGGGAAAGTACAA
ATGGAAGTGATTAGTGCACTGTTGCAAGAAAAGTATCATGTGGAGATAGAACTAAAAGAGCCTACAGTCATTTATATGGA
GAGACCGTTAAAAAATGCAGAATATACCATTCACATCGAAGTGCCGCCAAATCCTTTCTGGGCTTCCATTGGTTTATCTG
TATCACCGCTTCCGTTGGGAAGTGGAATGCAGTATGAGAGCTCGGTTTCTCTTGGATACTTAAATCAATCATTTCAAAAT
GCAGTTATGGAAGGGATACGCTATGGTTGCGAACAAGGATTATATGGTTGGAATGTGACGGATTGTAAAATCTGTTTTAA
GTATGGCTTATACTATAGCCCTGTTAGTACCCCAGCAGATTTTCGGATGCTTGCTCCTATTGTATTGGAACAAGTCTTAA
AAAAAGCTGGAACAGAATTGTTAGAGCCATATCTTAGTTTTAAAATTTATGCGCCACAGGAATATCTTTCACGAGCATAC
AACGATGCTCCTAAATATTGTGCGAACATCGTAGACACTCAATTGAAAAATAATGAGGTCATTCTTAGTGGAGAAATCCC
TGCTCGGTGTATTCAAGAATATCGTAGTGATTTAACTTTCTTTACAAATGGACGTAGTGTTTGTTTAACAGAGTTAAAAG
GGTACCATGTTACTACCGGTGAACCTGTTTGCCAGCCCCGTCGTCCAAATAGTCGGATAGATAAAGTACGATATATGTTC
AATAAAATAACTTAG

Protein sequence :
MEENHMKIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDT
PGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSMEIIIK
QKVELHPNMCVMSCTEPEQWDVVIEGNDDLLEKYMSGKSLEALELEQEEIRRFQNCSLYPVYHGSAKSNIGIEQLIEVIT
NKFYSSTYRKKSELCGNVFKIEYSEERQRLAYVRLYGGILHLRDSVRISEKEKIKITEMYTSINGELCKIDKAYSGEIVI
LQNEFLKLNSVLGDTKLLPQRERIENPLPLLQTTVEPSKPQQREMLLDALLEISDSDPLLQYYVDSTTHEIILSFLGKVQ
MEVISALLQEKYHVEIELKEPTVIYMERPLKNAEYTIHIEVPPNPFWASIGLSVSPLPLGSGMQYESSVSLGYLNQSFQN
AVMEGIRYGCEQGLYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLEPYLSFKIYAPQEYLSRAY
NDAPKYCANIVDTQLKNNEVILSGEIPARCIQEYRSDLTFFTNGRSVCLTELKGYHVTTGEPVCQPRRPNSRIDKVRYMF
NKIT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSU05_0922 YP_001198287.1 translation elongation factor (GTPases) Not tested 89K Protein 0.0 100
SSU98_0928 YP_001200485.1 translation elongation factor (GTPases) Not tested 89K Protein 0.0 100
tetO AFJ97266.1 truncated tetracycline resistant protein Not tested Not named Protein 1e-163 75
tet(W) YP_005160006.1 tetracycline resistance protein Not tested Not named Protein 0.0 69

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SSU05_0922 YP_001198287.1 translation elongation factor (GTPases) AM180355.1.gene636.p Protein 0.0 96
SSU05_0922 YP_001198287.1 translation elongation factor (GTPases) M85225.gene.p01 Protein 0.0 95
SSU05_0922 YP_001198287.1 translation elongation factor (GTPases) X04388.gene.p01 Protein 0.0 94
SSU05_0922 YP_001198287.1 translation elongation factor (GTPases) NC_002758.1120355.p0 Protein 0.0 93
SSU05_0922 YP_001198287.1 translation elongation factor (GTPases) NC_009782.5559075.p0 Protein 0.0 93
SSU05_0922 YP_001198287.1 translation elongation factor (GTPases) L09756.gene.p01 Protein 0.0 80
SSU05_0922 YP_001198287.1 translation elongation factor (GTPases) AJ295238.gene.p01 Protein 0.0 72
SSU05_0922 YP_001198287.1 translation elongation factor (GTPases) DQ294299.gene.p01 Protein 0.0 69
SSU05_0922 YP_001198287.1 translation elongation factor (GTPases) AY485126.gene.p01 Protein 0.0 69
SSU05_0922 YP_001198287.1 translation elongation factor (GTPases) AJ222769.gene.p01 Protein 0.0 69
SSU05_0922 YP_001198287.1 translation elongation factor (GTPases) FN594949.1.gene24.p0 Protein 0.0 67
SSU05_0922 YP_001198287.1 translation elongation factor (GTPases) L42544.gene.p01 Protein 1e-129 45
SSU05_0922 YP_001198287.1 translation elongation factor (GTPases) AJ514254.gene.p01 Protein 3e-125 44
SSU05_0922 YP_001198287.1 translation elongation factor (GTPases) Z21523.gene.p01 Protein 4e-110 41