Gene Information

Name : Fjoh_3495 (Fjoh_3495)
Accession : YP_001195828.1
Strain : Flavobacterium johnsoniae UW101
Genome accession: NC_009441
Putative virulence/resistance : Unknown
Product : rRNA large subunit methyltransferase
Function : -
COG functional category : S : Function unknown
COG ID : COG1576
EC number : -
Position : 4171624 - 4172097 bp
Length : 474 bp
Strand : +
Note : SPOUT methyltransferase; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA

DNA sequence :
ATGAACATCAAACTCATCGCTATAGGCAAAACAGATAATAAATCGCTTCAAACTTTGATTGACGATTATACCAAACGTTT
ATCCTTTTATATCAAATTTGATCTGGAAATTATTCCTGACATTAAAAATGTAAAAAACTTATCTGAAAGCCAGCAAAAGG
AAAAAGAAGGCGAACTGATTCTGTCTAAACTTTCGGCAACTGATCAGCTTATTTTATTGGATGAAAACGGAAAAACCTTC
TCTAGTGTTGGTTTCTCAGAAGAACTCCAAAAGAAAATGAATTCTGGTGTAAAAACACTGGTTTTTGTAATTGGCGGACC
TTACGGATTCTCTGAAACGATTTATAAAAAAGCGCAGGGAAAAGTTTCGCTTTCGCTAATGACATTTTCGCATCAAATGG
TTCGCTTATTTTTTATTGAACAATTGTACCGCGGATTTACAATTTTACGCAACGAACCTTATCATCATCAATAA

Protein sequence :
MNIKLIAIGKTDNKSLQTLIDDYTKRLSFYIKFDLEIIPDIKNVKNLSESQQKEKEGELILSKLSATDQLILLDENGKTF
SSVGFSEELQKKMNSGVKTLVFVIGGPYGFSETIYKKAQGKVSLSLMTFSHQMVRLFFIEQLYRGFTILRNEPYHHQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
orfX YP_251938.1 rRNA large subunit methyltransferase Not tested SCCmec Protein 3e-28 43
unnamed BAB72138.1 open reading frame X Not tested Type-IVb SCCmec Protein 2e-27 42
SAV0024 NP_370548.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 3e-27 42
unnamed BAC67575.1 open reading frame X Not tested Type-IVc SCCmec Protein 2e-27 42
unnamed BAA82243.1 orfX Not tested Type-II SCCmec Protein 2e-27 42
orfX AAL26648.1 unknown Not tested SCCcap1 Protein 2e-26 42
unnamed BAD24821.1 conserved hypothetical protein orfX Not tested Type-V SCCmec Protein 2e-27 42
orfX BAA86653.1 open reading frame X Not tested Type-I SCCmec Protein 2e-27 42
unnamed BAG06184.1 conserved hypothetical protein orfX Not tested Type-VII SCCmec Protein 2e-27 42
unnamed BAB47681.1 open reading frame X Not tested Type-III SCCmec Protein 2e-27 42
unnamed BAC53844.1 open reading frame X Not tested SRImec-III and SCCmec-III region Protein 2e-27 42
unnamed BAC57492.1 hypothetical protein Not tested Type-IIIinv SCCmec Protein 2e-27 42
unnamed BAB72121.1 hypothetical protein Not tested Type-IVa SCCmec Protein 2e-27 42
SAR0024 YP_039501.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 3e-27 42
SE0023 NP_763578.1 rRNA large subunit methyltransferase Not tested SCCpbp4 Protein 3e-27 41
SERP2529 YP_190070.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 3e-27 41