|
Name : smpB (Fjoh_3443) Accession : YP_001195776.1 Strain : Flavobacterium johnsoniae UW101 Genome accession: NC_009441 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 4110999 - 4111454 bp Length : 456 bp Strand : + Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGTTAAAATCAGTCAATATACTTAATAAAAGAGCCCGGTTTGATTACGAAATAATCGACACCTATACTGCCGGAATTGT TTTGGCAGGAACCGAAATTAAATCGATACGTTTAGGAAAAGCGAATATTACAGAAAGCTTCTGCGAATTCAGCGGGATTG AACTTTTTGCAATCAATACTTATATAGAGGAATATTCATTTGGGAATCAATTCAACCATAAATCAAGAAGTGAACGAAAA TTGCTTTTAAATAAAAAAGAATTAAAAAGCCTTCATAAAAGTGTTCAGGCAAAAGGTCTTACCATTGTACCTTTAAAATT GTTTACCAATGAAAAAGGTCTTGCAAAATTGCAGATTGGTCTTTGTAAAGGAAAGAAAAACTACGACAAACGTGAATCTC TAAAAGAGCAGGATACAAAACGCGACTTAGACAGAATTAAAAAAGCATATAACTAA Protein sequence : MLKSVNILNKRARFDYEIIDTYTAGIVLAGTEIKSIRLGKANITESFCEFSGIELFAINTYIEEYSFGNQFNHKSRSERK LLLNKKELKSLHKSVQAKGLTIVPLKLFTNEKGLAKLQIGLCKGKKNYDKRESLKEQDTKRDLDRIKKAYN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 1e-18 | 49 |
| smpB | YP_001800894.1 | SsrA-binding protein | Not tested | Not named | Protein | 5e-14 | 41 |
