Gene Information

Name : Pmen_0965 (Pmen_0965)
Accession : YP_001186465.1
Strain : Pseudomonas mendocina ymp
Genome accession: NC_009439
Putative virulence/resistance : Virulence
Product : two-component response regulator PilR
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 1089656 - 1090996 bp
Length : 1341 bp
Strand : -
Note : PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase

DNA sequence : 
ATGACCCGCCAGAGAGCCTTGATCGTCGACGACGAACCGGACATCCGCGAACTGCTGGAAATCACCCTCGGCCGGATGAA
GCTGGACACGCGCAGCGCACGCAACGTCAAGGAAGCGCGCGAATGGCTGGCCCGCGAGCCGTTCGACCTGTGCCTGACCG
ACATGCGCCTGCCCGACGGCACCGGCCTCGACCTGGTGCAACACATCCAGCAGCGCCACCCGCAGGTACCGGTGGCGATG
ATCACCGCCTACGGCAGCCTGGATACCGCGATCAACGCGCTCAAGGCCGGCGCCTTCGATTTCGTCACCAAGCCGGTGGA
CCTCGGCCGCCTGCGCGAGCTGGTCGCCACCGCCCTGCGCATCCGCTCCCCCGAGGGCGAAGGCGCTCCGGTGGACAACC
GCCTGCTCGGCGACTCGCCGCCGATGAAGGCACTGCGCAAGCAGATCCAGAAGCTCGCCCGCAGCCAGGCGCCGGTGTAT
ATCAGCGGCGAGTCCGGCAGCGGCAAGGAACTGGTGGCGCGTCTGATCCACGAGCAGGGCCCGCGCGCCGAACAGCCGTT
CGTCCCGGTCAACTGCGGCGCCATCCCTTCGGAGCTGATGGAGAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACCG
GGGCCATCGAGGACAAGCAGGGCCTGTTCCAGGCCGCCAACGGCGGCACCCTGTTCCTCGACGAAGTGGCCGACCTGCCG
CTGCCGATGCAGGTCAAGCTGCTGCGCGCCATTCAGGAAAAGGCCGTACGCGCCGTCGGTGGTCAGCAGGAAGTGGTGGT
CGATGTGCGCATCCTCTGCGCCACCCACAAGGATTTGGCCGCCGAGGTGGCCGCCGGGCGCTTCCGCCAAGACCTCTACT
ACCGCCTCAACGTCATCGAACTGCGCGTGCCACCGCTGCGCGAACGCCGCGAGGACATCGCCCAACTGGCCGAGGTCATG
CTCGCCCGCCTGGCCGAGGGTAGCGGTCTGAGCGCCGCCAAGCTGCAGCCCGAAGCCTTGGAGAAACTGAAGAACTATCG
CTTCCCGGGCAACGTGCGCGAGCTGGAGAACATGCTCGAACGCGCCTACACCCTGTGCGAGGACGACCAGATCAGACCCG
CCGACCTACGCCTGGCCGATGCGAGCGGCCCCAGCGGCGAAACCGGCGAGGCCAGCCTGGCGCTGATCGACAATCTGGAA
GACTATCTCGAAGGCATCGAACGCAAACTGATCATGCAGGCGCTCGAAGAAACCCGCTGGAACCGCACGGCGGCGGCCCA
GCGCCTGGGCCTGACCTTCCGTTCGATGCGCTATCGATTGAAGAAGCTGGGGATCGACTAA

Protein sequence : 
MTRQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREWLAREPFDLCLTDMRLPDGTGLDLVQHIQQRHPQVPVAM
ITAYGSLDTAINALKAGAFDFVTKPVDLGRLRELVATALRIRSPEGEGAPVDNRLLGDSPPMKALRKQIQKLARSQAPVY
ISGESGSGKELVARLIHEQGPRAEQPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGQQEVVVDVRILCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIAQLAEVM
LARLAEGSGLSAAKLQPEALEKLKNYRFPGNVRELENMLERAYTLCEDDQIRPADLRLADASGPSGETGEASLALIDNLE
DYLEGIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 8e-101 50
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 8e-101 50

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pmen_0965 YP_001186465.1 two-component response regulator PilR BAC0467 Protein 4e-71 44
Pmen_0965 YP_001186465.1 two-component response regulator PilR BAC0089 Protein 1e-70 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pmen_0965 YP_001186465.1 two-component response regulator PilR VFG1214 Protein 0.0 90
Pmen_0965 YP_001186465.1 two-component response regulator PilR VFG0116 Protein 9e-56 44
Pmen_0965 YP_001186465.1 two-component response regulator PilR VFG1249 Protein 3e-66 41