Gene Information

Name : Pmen_0090 (Pmen_0090)
Accession : YP_001185596.1
Strain : Pseudomonas mendocina ymp
Genome accession: NC_009439
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : S : Function unknown
COG ID : COG3516
EC number : -
Position : 85896 - 86402 bp
Length : 507 bp
Strand : +
Note : PFAM: uncharacterised conserved protein UCP028301

DNA sequence : 
ATGGCCAAAGAAGGCTCGGTAGCCCCCAAGGAACGCATCAACGTCACCTTCAAACCCGCCACCGGCGGCGCCCAGGAAGA
AATCGAACTGCCCCTGAAGCTCATGGTGCTCGGCGATTTCACCCAGCGTGCCGACGATCGCAAGATCGAAGACCGCAAGC
CCATCAGCATCGACAAGAACAGCTTCGACGAAGTGCTGGCCAAGCAGGAACTGAACCTGACCTTCGCCGTGCCGAACCGT
CTGCAGGACGAGCAGACCGATGACGAGCTGGCCGTGCAGCTGCGCATCAACTCCATGAAGGACTTCAACCCCGCCAACCT
GGTCGAGCAGGTACCGGAGCTGAAGAAGCTGATGGAACTGCGCGACGCCCTGGTCGCCCTCAAAGGCCCGCTGGGCAACG
CCCCGGCCTTCCGCAAGGCGATCGAAAGCGTGCTCTCCGACGACGACTCGCGCGATCGCGTGCTCGGCGAACTGGGCCTG
GCCGCCAAAGACAAGCTGGATTCCTGA

Protein sequence : 
MAKEGSVAPKERINVTFKPATGGAQEEIELPLKLMVLGDFTQRADDRKIEDRKPISIDKNSFDEVLAKQELNLTFAVPNR
LQDEQTDDELAVQLRINSMKDFNPANLVEQVPELKKLMELRDALVALKGPLGNAPAFRKAIESVLSDDDSRDRVLGELGL
AAKDKLDS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HH0248 NP_859779.1 hypothetical protein Not tested HHGI1 Protein 7e-31 48
aec17 YP_851427.1 hypothetical protein Not tested PAI II APEC-O1 Protein 9e-30 42
aec17 AAQ96711.1 Aec17 Not tested AGI-1 Protein 6e-30 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pmen_0090 YP_001185596.1 hypothetical protein VFG2092 Protein 1e-36 57
Pmen_0090 YP_001185596.1 hypothetical protein VFG2474 Protein 3e-36 51