Gene Information

Name : Pmen_0613 (Pmen_0613)
Accession : YP_001186113.1
Strain : Pseudomonas mendocina ymp
Genome accession: NC_009439
Putative virulence/resistance : Virulence
Product : small multidrug resistance protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG2076
EC number : -
Position : 676383 - 676715 bp
Length : 333 bp
Strand : +
Note : PFAM: small multidrug resistance protein

DNA sequence : 
ATGCCCGGATACCTCTACCTCGCCATTGCCATCGCCGCCGAAGTGGTCGCCACCACCTCGATGAAGGCCATCGACGGCTT
CAGCAAGCCGTTGCCGTTGCTGCTGGTGGTGGGCGGCTACGCGATCGCCTTCTGGATGCTGACCCTGGTGGTGCGCACCA
TTCCGGTGGGCATCGCCTACGCCATCTGGGCCGGCCTGGGCATCGTGCTGGTCAGCATCGCCGCGCTGTTTCTCTACCAG
CAGAAGCTCGACCTGCCGGCCGTGCTCGGCATGGGGTTGATCGTCAGCGGGGTGGTGGTGATTCAGCTGTTCTCGCAATC
GACCGGGCACTGA

Protein sequence : 
MPGYLYLAIAIAAEVVATTSMKAIDGFSKPLPLLLVVGGYAIAFWMLTLVVRTIPVGIAYAIWAGLGIVLVSIAALFLYQ
QKLDLPAVLGMGLIVSGVVVIQLFSQSTGH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42067.1 hypothetical protein Not tested PAI II 536 Protein 3e-14 46

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pmen_0613 YP_001186113.1 small multidrug resistance protein CP004022.1.gene1549. Protein 4e-24 64
Pmen_0613 YP_001186113.1 small multidrug resistance protein BAC0377 Protein 4e-24 60
Pmen_0613 YP_001186113.1 small multidrug resistance protein BAC0324 Protein 3e-17 53
Pmen_0613 YP_001186113.1 small multidrug resistance protein CP001138.1.gene1489. Protein 5e-19 52
Pmen_0613 YP_001186113.1 small multidrug resistance protein BAC0322 Protein 3e-17 51
Pmen_0613 YP_001186113.1 small multidrug resistance protein NC_002695.1.913273.p Protein 9e-16 49
Pmen_0613 YP_001186113.1 small multidrug resistance protein BAC0002 Protein 9e-19 49
Pmen_0613 YP_001186113.1 small multidrug resistance protein NC_010410.6003348.p0 Protein 9e-19 49
Pmen_0613 YP_001186113.1 small multidrug resistance protein BAC0150 Protein 1e-15 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pmen_0613 YP_001186113.1 small multidrug resistance protein VFG1586 Protein 1e-14 46