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Name : Pmen_0049 (Pmen_0049) Accession : YP_001185555.1 Strain : Pseudomonas mendocina ymp Genome accession: NC_009439 Putative virulence/resistance : Virulence Product : YscU/HrpY family type III secretion protein Function : - COG functional category : N : Cell motility COG ID : COG1377 EC number : - Position : 45496 - 46575 bp Length : 1080 bp Strand : + Note : TIGRFAM: type III secretion protein, YscU/HrpY family; PFAM: type III secretion exporter DNA sequence : ATGAGCGAAAAAACGGAGAAGGCGACGCCCAAGCAACTGCGTGATGCGCGGGAAAAGGGGCAGATTGCGCAGAGTCAGGA CGTCAGCAAGCTGTTGATCCTGCTGATGGTCAGCGAAATCACCTGGAGCCTGGCCACGGAGAGCGTACAACGCCTGCAGC ACCTGATGGCGCTTGCCATCAATGCGACCGGGCAGCCGTTTCTGCGGATTGTGGGGCAACTGGTCGACGAGGCCGTGACC GTATTGCTCGGCTTCCTGATCTTCAGTGTCGGTGTCGCCATGGTGATGCGTCTGGCCGGAGGCTGGGCTCAGTTCGGGTT TCTCTTCGCACCCAAGGCACTGAAGATCGATTTCAACAAGCTCAATCCGTTTCCCCAGCTCAAGCAGATGTTCTCTGCGC AGAACCTAACCAACTTGCTGATGAGCATCCTCAAGGCTGCAGTCATCGGCATCACGCTCTACGTTCTGCTCTGGCCAGAG CTGGGTACATTGATCCTGCTGGCCAACTCCGACCTGGATACCTACTGGCAATCGTTGATGGAGGTGTTTCGCTACATCCT GCGCTGCACCCTGGGTCTACTCCTGGTGCTGGCTGCAGTGGATTTCGGCCTGCAGAAATACTTCCATGCCAAGAAACTGC GCATGAGCAAGGATGACGTGAAGAAGGAGTACAAGCAGTCGGAGGGCGACCCGATGGTGAAGGGGCAGCGACGCCAACTG GCGCACGAACTGCTCAATCAGCCGCCTTCGACCGCGGCAAGGCCAGTGGAGGAGGCCGATATGCTGGTGGTTAACCCGAC CCACTATGCCGTGGCCCTGTACTACCGTCCGGGCAAGACACCCTTGCCGATGATTCACTGCAAGGGCGAGGACGAAGACG CATTGGCCCTGATCGCGCGGGCCAAGAAAGCCAGGATTCCCGTGGTGCAGAGCGTCTGGCTCGCGCGCACCCTGTACAAG GTCAATGCAGGACGCCATATCCCCCGTCCGACCCTGGAGGCTGTCGCCCACATCTATCAGTTGGTGAAACAGCTGGACGA GGTGACCGACGAAATCATCCAGGCCGACTCCGGGCTCTGA Protein sequence : MSEKTEKATPKQLRDAREKGQIAQSQDVSKLLILLMVSEITWSLATESVQRLQHLMALAINATGQPFLRIVGQLVDEAVT VLLGFLIFSVGVAMVMRLAGGWAQFGFLFAPKALKIDFNKLNPFPQLKQMFSAQNLTNLLMSILKAAVIGITLYVLLWPE LGTLILLANSDLDTYWQSLMEVFRYILRCTLGLLLVLAAVDFGLQKYFHAKKLRMSKDDVKKEYKQSEGDPMVKGQRRQL AHELLNQPPSTAARPVEEADMLVVNPTHYAVALYYRPGKTPLPMIHCKGEDEDALALIARAKKARIPVVQSVWLARTLYK VNAGRHIPRPTLEAVAHIYQLVKQLDEVTDEIIQADSGL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcU | NP_791219.1 | type III secretion protein HrcU | Virulence | Hrp PAI | Protein | 4e-116 | 70 |
| hrcU | AAT96203.1 | HrcU | Virulence | T-PAI | Protein | 2e-121 | 69 |
| hrcU | ABQ88362.1 | HrcU | Virulence | Hrp PAI | Protein | 2e-115 | 69 |
| hrpY | AAB05078.1 | HrpY | Virulence | Hrp PAI | Protein | 2e-115 | 69 |
| hrcU | AAT96149.1 | HrcU | Virulence | T-PAI | Protein | 2e-121 | 69 |
| hrcU | AAG33887.1 | HrcU | Virulence | Hrp PAI | Protein | 1e-97 | 68 |
| hrcU | AAC35808.1 | hrp type III pathway protein | Virulence | Hrp PAI | Protein | 4e-101 | 67 |
| hrcU | ABA47282.1 | HrcU | Virulence | S-PAI | Protein | 3e-85 | 56 |
| hrcU | AAT96265.1 | HrcU | Virulence | S-PAI | Protein | 1e-80 | 54 |
| hrcU | AAT96346.1 | HrcU | Virulence | S-PAI | Protein | 7e-78 | 54 |
| hrcU | AAT96306.1 | HrcU | Virulence | S-PAI | Protein | 2e-80 | 54 |
| hrcU | AAB06008.1 | HrcU | Virulence | Hrp PAI | Protein | 3e-82 | 53 |
