|
Name : Pmen_0047 (Pmen_0047) Accession : YP_001185553.1 Strain : Pseudomonas mendocina ymp Genome accession: NC_009439 Putative virulence/resistance : Virulence Product : HrpO family type III secretion protein Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4794 EC number : - Position : 44435 - 44698 bp Length : 264 bp Strand : + Note : TIGRFAM: type III secretion protein, HrpO family; PFAM: export protein FliQ, family 3 DNA sequence : ATGGAGGCGTTGGCGCTGTTCAAGCAAGGCATGTTCCTGGTGGTTATCCTGACTGCACCGCCATTGGCCGTGGCGGTGCT GGTCGGGGTGACGACATCGCTGGTACAGGCGCTGATGCAGATGCAGGATCAGACGCTGCCGTTCGGTTTGAAACTGGCTG CCGTCGGCCTGACCCTGGCGATGACCGGACGCTGGATCGGCCTGGAGTTGATTCAGTTCACCAATATGGCGTTCGACCTG ATTGCCCGCTCAGGGGGCAATTAG Protein sequence : MEALALFKQGMFLVVILTAPPLAVAVLVGVTTSLVQALMQMQDQTLPFGLKLAAVGLTLAMTGRWIGLELIQFTNMAFDL IARSGGN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcS | ABQ88360.1 | HrcS | Virulence | Hrp PAI | Protein | 2e-19 | 92 |
| hrpO | AAB05076.1 | HrpO | Virulence | Hrp PAI | Protein | 2e-19 | 92 |
| hrcS | NP_791221.1 | type III secretion protein HrcS | Virulence | Hrp PAI | Protein | 7e-20 | 91 |
| hrcS | AAG33885.1 | HrcS | Virulence | Hrp PAI | Protein | 5e-20 | 91 |
| hrcS | AAT96147.1 | HrcS | Virulence | T-PAI | Protein | 3e-20 | 90 |
| hrcS | AAT96201.1 | HrcS | Virulence | T-PAI | Protein | 3e-20 | 90 |
| hrcS | AAT96263.1 | HrcS | Virulence | S-PAI | Protein | 3e-14 | 66 |
| hrcS | AAT96304.1 | HrcS | Virulence | S-PAI | Protein | 3e-14 | 66 |
| hrcS | AAT96344.1 | HrcS | Virulence | S-PAI | Protein | 3e-14 | 66 |
| hrcS | ABA47280.1 | HrcS | Virulence | S-PAI | Protein | 3e-14 | 64 |
| hrcS | AAB06006.1 | HrcS | Virulence | Hrp PAI | Protein | 5e-13 | 61 |
