Gene Information

Name : Pmen_0046 (Pmen_0046)
Accession : YP_001185552.1
Strain : Pseudomonas mendocina ymp
Genome accession: NC_009439
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 43774 - 44427 bp
Length : 654 bp
Strand : +
Note : part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response

DNA sequence : 
ATGATTCTGGACGGAATGAACCCCATCATGCTGGCGCTGTTCCTTGGCGCCCTGTCGTTGATTCCCTTCCTGCTCATCGT
CTGCACGGCATTTCTCAAGATCGCCATGACGCTGATGATCACCCGTAACGCCATTGGCGTGCAGCAGGTTCCACCGAACA
TGGCGATCTACGGTATCGCCCTGGCGGCGACCATGTTCGTGATGGCGCCGGTTGCCTACGAAATCCAGAACCGACTCAGT
GACAACCCCCTGGACCTGTCGTCCACGGACAGTCTCCAGGCCAGTGCCGGCAACGTGGTGGAGCCGTTGCAGGACTTCAT
GGTGAACAACACCGACCCGGACATCGCCACGCATCTTCTGGAAAACACCCAGCGCATGTGGCCCAGGGAAATGTCCGAGA
AGGCCAGCAAAAGCGACCTGCTGCTGGCGATTCCGGCGTTCGTGCTGTCCGAGCTGCAGGCTGCGTTTCAGATCGGTTTT
CTGATCTACATCCCGTTCATCGTGATCGACCTGATCATTTCCAATCTGCTGCTGGCGCTGGGCATGCAGATGGTGTCGCC
GATGACCATCTCGCTGCCGCTGAAGCTGTTGCTGTTCGTCCTGGTGGACGGCTGGACGCGGCTGCTCAACAGCCTCTTCT
ACTCCTATATGTGA

Protein sequence : 
MILDGMNPIMLALFLGALSLIPFLLIVCTAFLKIAMTLMITRNAIGVQQVPPNMAIYGIALAATMFVMAPVAYEIQNRLS
DNPLDLSSTDSLQASAGNVVEPLQDFMVNNTDPDIATHLLENTQRMWPREMSEKASKSDLLLAIPAFVLSELQAAFQIGF
LIYIPFIVIDLIISNLLLALGMQMVSPMTISLPLKLLLFVLVDGWTRLLNSLFYSYM

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 4e-77 83
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 4e-81 83
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 4e-81 83
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 7e-77 82
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 2e-73 82
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 7e-77 82
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 9e-64 74
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 9e-64 74
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 9e-64 74
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 8e-68 74
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 1e-67 72
lscR AAO18040.1 LscR Virulence TTSS locus Protein 1e-38 49
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 5e-36 48
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 8e-36 45
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 1e-35 45
escR AAC38369.1 EscR Virulence LEE Protein 9e-35 45
escR AAK26700.1 EscR Virulence LEE Protein 9e-36 45
escR AAL57527.1 EscR Virulence LEE Protein 9e-36 45
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 6e-35 45
escR CAC81847.1 EscR protein Virulence LEE II Protein 9e-36 45
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 1e-35 45
escR CAI43889.1 EscR protein Virulence LEE Protein 9e-36 45
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 1e-35 45
escR AAC31528.1 L0049 Virulence LEE Protein 8e-36 45
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 1e-35 45
unnamed AAL06354.1 EscR Virulence LEE Protein 1e-34 45
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 3e-32 44
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 3e-32 44
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 2e-31 44
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 2e-31 44
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 1e-31 44
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 1e-31 44
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 9e-32 44
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 1e-29 43
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 1e-29 43
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 8e-30 42
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 5e-30 42
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 5e-30 42
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 8e-30 42
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 8e-30 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pmen_0046 YP_001185552.1 type III secretion system protein VFG0044 Protein 1e-37 50
Pmen_0046 YP_001185552.1 type III secretion system protein VFG0188 Protein 4e-39 48
Pmen_0046 YP_001185552.1 type III secretion system protein VFG0394 Protein 4e-38 48
Pmen_0046 YP_001185552.1 type III secretion system protein VFG0827 Protein 4e-36 45
Pmen_0046 YP_001185552.1 type III secretion system protein VFG0715 Protein 4e-35 45
Pmen_0046 YP_001185552.1 type III secretion system protein VFG0519 Protein 5e-32 44
Pmen_0046 YP_001185552.1 type III secretion system protein VFG2338 Protein 1e-21 43
Pmen_0046 YP_001185552.1 type III secretion system protein VFG1773 Protein 1e-30 43
Pmen_0046 YP_001185552.1 type III secretion system protein VFG2016 Protein 6e-23 41
Pmen_0046 YP_001185552.1 type III secretion system protein VFG1259 Protein 2e-23 41