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Name : rph (Pmen_4386) Accession : YP_001189865.1 Strain : Pseudomonas mendocina ymp Genome accession: NC_009439 Putative virulence/resistance : Unknown Product : ribonuclease PH Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0689 EC number : 2.7.7.56 Position : 4809772 - 4810491 bp Length : 720 bp Strand : - Note : RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs DNA sequence : ATGAAACGTCCCAGTGGCCGCGCCGCCGATCAGTTGCGCTCGATTCGCATCACCCGCAACTACACCAAGCATGCCGAGGG TTCGGTGCTGGTCGAGTTCGGCGATACCAAGGTGATCTGCACCGTCAGCGTCGAATCCGGCGTGCCGCGTTTCCTCAAGG GCCAGGGCCAGGGTTGGCTGACTGCCGAATACGGCATGCTGCCGCGCGCCACCGGCGAGCGTAACCAGCGCGAGGCCAGC CGCGGCAAGCAGGGCGGCCGTACTCTGGAAATCCAGCGCCTGATTGGCCGCTCGCTGCGCGCTGCGCTGGACATGAGCAA GCTGGGCGAGAACACCCTGTACGTCGATTGCGACGTGATCCAGGCCGACGGCGGCACCCGCACTGCCTCCATCACCGGCG CCATGGTGGCGCTGATCGACGCGCTGAAGGTGCTGAAGAAGCGTGGTTCGCTCAAGGGCGAGCCGCTCAAGCAGATGATC GCAGCGGTGTCGGTGGGCATCTACCAGGGCGAGCCGGTGCTGGATCTGGACTACCTGGAAGATTCCGCCGCCGAGACCGA CCTCAACGTGGTGATGACCAATGCCGGTGGCTTCATCGAGGTGCAGGGCACCGCCGAAGGCGCGCCGTTCCAGCCGGAGG AATTCAATGCCATGCTGGCGCTGGCGCAGAAGGGCATGAACGAGATCTTTGAACTGCAGAAAGCCGCTCTGGTCGACTGA Protein sequence : MKRPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVESGVPRFLKGQGQGWLTAEYGMLPRATGERNQREAS RGKQGGRTLEIQRLIGRSLRAALDMSKLGENTLYVDCDVIQADGGTRTASITGAMVALIDALKVLKKRGSLKGEPLKQMI AAVSVGIYQGEPVLDLDYLEDSAAETDLNVVMTNAGGFIEVQGTAEGAPFQPEEFNAMLALAQKGMNEIFELQKAALVD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| rph | YP_001800860.1 | ribonuclease PH | Not tested | Not named | Protein | 1e-66 | 62 |
