Gene Information

Name : radC (Pmen_4376)
Accession : YP_001189855.1
Strain : Pseudomonas mendocina ymp
Genome accession: NC_009439
Putative virulence/resistance : Virulence
Product : DNA repair protein RadC
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2003
EC number : -
Position : 4800411 - 4801085 bp
Length : 675 bp
Strand : -
Note : Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase

DNA sequence : 
ATGAGCATTCGTGACTGGCCCGCGGCGGAGCGTCCGCGGGAAAAACTCCTGGCGCAGGGCGCGGCCGCGCTGACCGACGC
CGAACTGCTGGCGATCTTCCTGCGTACCGGTGTGGCCGGCTGCAGCGCGGTGGATCTGGCGCGCCGGCTGCTCGCCGAGT
TCGGCAGCCTGCGTGCGCTGCTCGAGGCGGAGTTGCCCGACTTCAGCCAGCACCTGGGCCTGGGCCCGGCCAAGTACGCG
CAGCTGCAGGCCGTGCTGGAGATGGCCAGACGGCACCTGGCCGAGCGGCTGCGTCGCGATTCGGCGCTGGAAAGCCCGCA
GGCCGTGCGCGATTACCTCAAGGCGCAGCTGCGCCATGAGCCGCACGAGGTGTTCGGCTGTCTGTTTCTCGATGCCAAGC
ACCGCGTGCTGGCCTTCGAAGTACTGTTTCGCGGCAGCATCGACAGCGCCAGCGTCTACCCGCGGCAGGTGGTCAAGCGA
GCGCTGGCCAACAATGCCGCGGCCGTCATCCTCACCCACAATCACCCATCCGGTGTCTGCGAACCCAGTCAGGCCGACCG
CGTGCTGACCCAGCGGCTCAAGGATGCGCTGGCGCTGGTGGAAGTGCGCGTGCTCGATCACTTCATCGTCGGCGACGGCG
AGCCGCTGTCGATGGCCGAGCTGGGCTGGATGTAG

Protein sequence : 
MSIRDWPAAERPREKLLAQGAAALTDAELLAIFLRTGVAGCSAVDLARRLLAEFGSLRALLEAELPDFSQHLGLGPAKYA
QLQAVLEMARRHLAERLRRDSALESPQAVRDYLKAQLRHEPHEVFGCLFLDAKHRVLAFEVLFRGSIDSASVYPRQVVKR
ALANNAAAVILTHNHPSGVCEPSQADRVLTQRLKDALALVEVRVLDHFIVGDGEPLSMAELGWM

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1786 NP_231421.1 DNA repair protein RadC Not tested VPI-2 Protein 2e-31 50
VC0395_A1383 YP_001217326.1 DNA repair protein RadC Not tested VPI-2 Protein 2e-31 50
VPI2_0034 ACA01849.1 DNA repair protein RadC Not tested VPI-2 Protein 3e-32 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
radC YP_001189855.1 DNA repair protein RadC VFG1119 Protein 6e-32 50