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Name : Pmen_4342 (Pmen_4342) Accession : YP_001189821.1 Strain : Pseudomonas mendocina ymp Genome accession: NC_009439 Putative virulence/resistance : Virulence Product : sigma-54 factor interaction domain-containing protein Function : - COG functional category : K : Transcription COG ID : COG3829 EC number : - Position : 4759654 - 4760484 bp Length : 831 bp Strand : - Note : PFAM: sigma-54 factor, interaction domain-containing protein; SMART: AAA ATPase DNA sequence : ATGAGTGTTCCACCCGACTTCCCGGCGCCGCTGACCTTCGCCGATTCGGACAAGAGCCCGCTGAGCATTCGGGCCAAGGC GCTGGTGTTCGTCGACCCGCGTTCACGTCAGTTGCGCGAGCGCGCCGAGGTGCTGGCGGGCAATGGTCAGCCGCTGCTGA TCCTTGGCGAGACCGGCACCGGCAAGGAATTGCTGGCGCGCTACATTCACCGGCAGAGCGAGCGTGGCGGCCTGTTCGTC GCACTGAGCTGCGCGGCGATCAGCCCGCAATGGGGCGAGGCCGAGTTGTTCGGCCATGTCGGCGGCGCCCATGTCGGGGC CGCCAGCAGCCGCGCCGGCTGGTTCGGTTCGGCCAATGGCGGCACGCTGTACCTGGACGAGATCGCCGATCTTTCGCGCC CGTTGCAGAGCAAGCTGCTGGCCGCGCTGGAAACCCGCGAGGTGTATCGCGTCGGTGCCAGCCAGGCCCTGCCGGCAGAC GTGCGCCTGGTGGCGGCGAGCAGCATCGACCTGGCTCGTGCGGTGGCGGCCGGCACGTTCGACGAGCGCCTGTACGCCTA CCTGTGCGACGGCCAGCTGCTGTTCCCGGCGCTGCGTCAGCGGGTCGGCGACATCCTGCCGCTGGCCGAGTACTTCCTCG GCATCCACGCCTCGCGCCTGGGCCTGGGCCTGGCCGTCCCGCCGATCAGCCCGGCGGCGCAGGCCGTGCTGGAGGCGCAC CGTTGGCCGGGCAATACCCGCGAGCTGGAGAACGTCATTCACTTCGCCCTGCTGCTGGCTGGAAATGCAGAGATTGGTCC GGAGCATCTGGAGTTGCCGGGTATTGCGTAA Protein sequence : MSVPPDFPAPLTFADSDKSPLSIRAKALVFVDPRSRQLRERAEVLAGNGQPLLILGETGTGKELLARYIHRQSERGGLFV ALSCAAISPQWGEAELFGHVGGAHVGAASSRAGWFGSANGGTLYLDEIADLSRPLQSKLLAALETREVYRVGASQALPAD VRLVAASSIDLARAVAAGTFDERLYAYLCDGQLLFPALRQRVGDILPLAEYFLGIHASRLGLGLAVPPISPAAQAVLEAH RWPGNTRELENVIHFALLLAGNAEIGPEHLELPGIA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrpS | ABQ88367.1 | HrpS | Virulence | Hrp PAI | Protein | 6e-30 | 44 |
| hrpS | AAA17650.1 | positive regulatory factor | Not tested | Hrp PAI | Protein | 6e-30 | 44 |
| hrpS | AAT96161.1 | HrpS | Virulence | T-PAI | Protein | 5e-28 | 44 |
| hrpS | AAT96215.1 | HrpS | Virulence | T-PAI | Protein | 5e-28 | 44 |
| hrpS | NP_791207.1 | type III transcriptional regulator HrpS | Virulence | Hrp PAI | Protein | 3e-27 | 43 |
| hrpS | AAC34753.1 | HrpS | Virulence | Hrp PAI | Protein | 2e-27 | 43 |
| hrpS | AAC35800.1 | transcriptional regulator | Virulence | Hrp PAI | Protein | 5e-26 | 42 |
