|
Name : Pmen_4301 (Pmen_4301) Accession : YP_001189780.1 Strain : Pseudomonas mendocina ymp Genome accession: NC_009439 Putative virulence/resistance : Virulence Product : type II secretion system protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 4707832 - 4709616 bp Length : 1785 bp Strand : + Note : PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase DNA sequence : ATGTCCGCATTTGCCGCCACCGCCCAAGACCGCGTACTGGATCTTGGCGACCTGCTGCGCGAGCTGGTTGCCCAGGGCCG GGTCGCCCAGGAGGTGGCCGAGCAGTGCCTGGCGATTCGCCGCAGTTCGCTGAACAACACCCAGCACCCGCTGGAATTCC TCGCGGCGCAGCAGGTCGACGACCTGACCCGCCCGGGCAAGAAACTCGATCTGGAAACCCTTACCGTCTGGCTGGCCAAC TTCGCCGGCCAACCCTACCTGCGCATCGACCCGCTGAAGATCGACGTACCGGCCATCACCCCATTGATGTCCTACGCCTT CGCCCAGCGTCACAAGATCCTTGCCGTGGCGGTGGACAGCGAGAGCGTGACCATCGCCAGCAGCCAGCCGCTGGTGCACA GCTGGGAAGCCAACCTGATCCACGTGCTCAAGCGCCCGATCAAGCGCGTGGTGGCTAACCCGGCGGACATCCAGCGCTTC ACCACCGAGTTCTATCGCCTGGCCCGCTCGGTCAGCGGTGCCAATGCCACCGATCAGAAGATCAGCGGCGTCGGCAACTT CGAGCAATTGCTCAGCCTCGGTGCGCAGGATCAGGAGCCGGACGCCAACGATGCGCACATCGTCAACATCGTCGACTGGC TGTTCCAGTACGCCTTCCAGCAGCGCGCCAGCGATATCCACATCGAACCGCGCCGCGAGCAGGGCACCGTGCGCTTTCGC ATCGACGGCGTGCTGCACAACGTCTACCAGTTCCCGGCCCAGGTCACCATGGCGGTGGTCAGCCGCCTGAAAAACCTCGG CCGCATGAACATCGCCGAAAAGCGCAAACCGCAGGACGGCCGGGTCAAGACCAAGACCCCGGACGGCGGCGAAGTGGAGC TGCGCCTGTCCACCCTGCCCACCGCCTTCGGCGAGAAGATGGTGATGCGTATCTTCGACCCCGAGGTGCTGCTGAAGAGC CCCGACCAGCTCGGCTTCTCCCCGGACGACCTGCGCCGCTGGCATAGCATGACGAGCCAGCCCAACGGCATCATCCTGGT CACCGGCCCCACCGGCTCGGGCAAGACCACCACGCTCTACACCACGCTCAAGCAACTGGCCACGCCGGAGGTGAACGTCT GCACCATCGAGGACCCGATCGAGATGATCGAGGGCGCCTTCAACCAGATGCAGGTGCAGCACAACATCGACCTGACCTTC GCCAGCGGCGTGCGCGCCCTGATGCGCCAGGACCCGGACATCATCATGGTCGGCGAGATTCGCGACCTGGAAACCGCCGA GATGGCCATCCAGGCCGCACTCACCGGTCACCTGGTACTCTCCACCCTGCACACCAACGATGCCCCCAGCGCCATCACCC GCCTGCTGGAACTGGGCGTGCCGCACTACCTGCTCAAGGCCACCATCCTCGGCGTCATGGCCCAGCGCCTGGTGCGTACC CTGTGCCCGCACTGCAAGGCACCGGTGCAGCTGGACGAGGACACCTGGAACGGCCTGACCCGGCCTTGGAGCTCGCCACT GCCGACCCAGGCGCACCACGCCGTCGGTTGCCTGGAATGTCGCGAAACCGGCTACCGCGGCCGCGCCGGCGTCTACGAGA TCATGCTGATCAACGACGCCATCAAGCCGCTGATCAGCGCCGACACCGACCTCACCGCCCTGCGCCGTGCGGCCTTCAAG GACGGCATGCGCAGCCTGCGCCTGTCCGGTGCACAGAAGATCGCCGCGGGCCTGACCACCATTGAGGAAGTGCTGCGCGT CACGCCGCAGAGCGAGCATCGCTGA Protein sequence : MSAFAATAQDRVLDLGDLLRELVAQGRVAQEVAEQCLAIRRSSLNNTQHPLEFLAAQQVDDLTRPGKKLDLETLTVWLAN FAGQPYLRIDPLKIDVPAITPLMSYAFAQRHKILAVAVDSESVTIASSQPLVHSWEANLIHVLKRPIKRVVANPADIQRF TTEFYRLARSVSGANATDQKISGVGNFEQLLSLGAQDQEPDANDAHIVNIVDWLFQYAFQQRASDIHIEPRREQGTVRFR IDGVLHNVYQFPAQVTMAVVSRLKNLGRMNIAEKRKPQDGRVKTKTPDGGEVELRLSTLPTAFGEKMVMRIFDPEVLLKS PDQLGFSPDDLRRWHSMTSQPNGIILVTGPTGSGKTTTLYTTLKQLATPEVNVCTIEDPIEMIEGAFNQMQVQHNIDLTF ASGVRALMRQDPDIIMVGEIRDLETAEMAIQAALTGHLVLSTLHTNDAPSAITRLLELGVPHYLLKATILGVMAQRLVRT LCPHCKAPVQLDEDTWNGLTRPWSSPLPTQAHHAVGCLECRETGYRGRAGVYEIMLINDAIKPLISADTDLTALRRAAFK DGMRSLRLSGAQKIAAGLTTIEEVLRVTPQSEHR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 2e-66 | 41 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 2e-66 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Pmen_4301 | YP_001189780.1 | type II secretion system protein E | VFG1880 | Protein | 7e-67 | 42 |
| Pmen_4301 | YP_001189780.1 | type II secretion system protein E | VFG2048 | Protein | 2e-68 | 41 |
