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Name : Pmen_3996 (Pmen_3996) Accession : YP_001189475.1 Strain : Pseudomonas mendocina ymp Genome accession: NC_009439 Putative virulence/resistance : Unknown Product : phage integrase family protein Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0582 EC number : - Position : 4368492 - 4369661 bp Length : 1170 bp Strand : - Note : PFAM: phage integrase family protein DNA sequence : ATGCCTTTAACCGATGTGAAGATCCGCCAGGCCAAGCCTGGACCGTCGCCAATCAAGATGGCCGATGGCGCTGGCTTGCA CCTAGAGGTCAGGCCGAACGGCTCCAAGCTGTGGCGCTACCGCTATCGGCTGGACGGTAAAGAGAACACCTTCGCCATCG GTGCCTACCCTGACGTTTCCCTTGCTGATGCACGTGCTGAGCGCGATGTCGCGCGCGAGCACGTGCGCGCAGGCCGGCAC CCTTCTCACGTACGGCAGACTGAGAAGGCCACCCAGCTCGCTGAGAATCGCAACACCTTCAAGGTCGTAGCTGAAGAGTG GATCGAGGACCGCCTGGGCCAGAGGTCACAGACGTATCGTGATCAGTGCCGGCGAGCATTCGTAAATGACGTGTATCCGG CTATCGGTCGCATGCCCATGCGTGAGATTACTGCCGCCCAGGTGCTGGCGATTCTGCGCAAGATGGACGGCCGTGGCGCA ACCACGCTCGCCCTGCAGGTTCGGCAGTGGATCTCGGCGGTGTTTCGGTTTGGGGTAGCAACGCTGCGTGCCGACGCTGA TCCTGCTGCCGCTCTCAAGGGAGCGATCCAGCGCAAGGCGATCAACCATAGCCAGCCGATGTCGCGTGAGCAGTTGGGGG AATACCTGGCGGCCGTTGACCGCTACAAGGGGCACCGAGGCACGGTGATCGCGCTCAAGCTGCTGCCGATGCTGTTTACC CGTACCGGTGAGCTGAGATGTGCCAGGTGGCCGGAATTCGATCTGGACGGGGCGATGTGGGAAATTCCGGCCGAGCGTAT GAAGATGCGGCGCAAGCATCTGGTGCCCTTGCCCCATCAGGCTGTCGAGCTGCTTCGAGAGCTGCGCAAGATCACTGCCG GCGAGCTGCTGTTCCCAGGGCTGCGTGATCCTGCCAGGCCGATCAGCCCCACCACCCTCAACCGAGCGCTTGAGTACCTG GATATGAGGGGGTGGCATTGCCATGACTTCCGCGCGACAGCTTCAACGCACCTTTATGAGATGGGGCGGTGGCGCTCAGA GGTGATCGAGCTGCAGCTGGCTCACGTGGAGCGCAACAAGGTGCGGGCTGCCTACAACCACGCTCAGTATCTAGCGGAGC GGCGAGAGATGATGCAGGCTTGGGCGGATTCAATCTTCGGGGAGGGGTGA Protein sequence : MPLTDVKIRQAKPGPSPIKMADGAGLHLEVRPNGSKLWRYRYRLDGKENTFAIGAYPDVSLADARAERDVAREHVRAGRH PSHVRQTEKATQLAENRNTFKVVAEEWIEDRLGQRSQTYRDQCRRAFVNDVYPAIGRMPMREITAAQVLAILRKMDGRGA TTLALQVRQWISAVFRFGVATLRADADPAAALKGAIQRKAINHSQPMSREQLGEYLAAVDRYKGHRGTVIALKLLPMLFT RTGELRCARWPEFDLDGAMWEIPAERMKMRRKHLVPLPHQAVELLRELRKITAGELLFPGLRDPARPISPTTLNRALEYL DMRGWHCHDFRATASTHLYEMGRWRSEVIELQLAHVERNKVRAAYNHAQYLAERREMMQAWADSIFGEG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| int | AAC31482.1 | CP4-like integrase | Not tested | LEE | Protein | 4e-61 | 43 |
| int | ACU09430.1 | integrase | Not tested | LEE | Protein | 4e-61 | 43 |
| intL | NP_290239.1 | integrase for prophage 933L and the LEE pathogenicity island | Not tested | LEE | Protein | 5e-61 | 43 |
| ECs4534 | NP_312561.1 | integrase | Not tested | LEE | Protein | 5e-61 | 43 |
| int | AAD44730.1 | Int | Not tested | SHI-2 | Protein | 5e-61 | 43 |
| aec33 | AAW51716.1 | Int | Not tested | AGI-3 | Protein | 2e-61 | 43 |
| int | CAC39282.1 | integrase | Not tested | LPA | Protein | 1e-61 | 43 |
| S4835 | NP_839238.1 | integrase | Not tested | SHI-2 | Protein | 2e-59 | 42 |
| SF3698 | NP_709437.1 | integrase | Not tested | SHI-2 | Protein | 2e-59 | 42 |
| int | AAD54663.1 | Sai integrase | Not tested | SHI-2 | Protein | 2e-59 | 42 |
| ESA_03025 | YP_001439090.1 | hypothetical protein | Not tested | Not named | Protein | 2e-56 | 41 |
| SESS1296_03598 | AFO66301.1 | bacteriophage integrase | Not tested | SESS LEE | Protein | 5e-58 | 41 |
| SESS1635_03816 | AFO66367.1 | bacteriophage integrase | Not tested | SESS LEE | Protein | 5e-58 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Pmen_3996 | YP_001189475.1 | phage integrase family protein | VFG0783 | Protein | 2e-61 | 43 |
| Pmen_3996 | YP_001189475.1 | phage integrase family protein | VFG0598 | Protein | 9e-60 | 42 |
