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Name : Pmen_0040 (Pmen_0040) Accession : YP_001185546.1 Strain : Pseudomonas mendocina ymp Genome accession: NC_009439 Putative virulence/resistance : Virulence Product : YscD/HrpQ family type III secretion apparatus protein Function : - COG functional category : - COG ID : - EC number : - Position : 39429 - 40343 bp Length : 915 bp Strand : + Note : TIGRFAM: type III secretion apparatus protein, YscD/HrpQ family DNA sequence : ATGTACGAACTGAGGGTATTGACCGGCCTGCACAAGGGCGCCGCACTGCCACTGATCGGTGAGCAATGGCTCATCGGTGC CGAAGAGGGTCGTGATCTGGCGTTGCACGATCCAGGGGTGGAAACCCTTCACTGCCGCTTGCAGCGGGCGGGCGACAGCT GGCAGTTGCTGGCCGAGGAAGGGGCCGTGCTCGACGGGGAGGGACACTCCCATGCGTCGATGGAAGTACTGCTTGATTGC CCACTCGTGCTCGGCTCCGTCTGGGTGTACCTGGCCGCCGCTGAGTCACCCTGGCCAACGTTGCCGGCACTCGTCGGTCA TCCCGGCGAAGACGGCGACAGCAAGGCCTCTGCGGAGGTCGGGGAACGAGGCCGTGTGCGTCTGCTCAATCGCGGCACCG GCATAGCGCTTGGCGTCTTGCTGGGCGTCATGGGCAGCGCCTGGAGCCTGAGTTGGCCGGTTGGCTCCGCTTCGGGACCT GCGGCGGTGCCGACGAGCGAGCCTGCCGCGGTTAGCGATGGCCGCACCCTATTGCAGAAGGACGAGGCGGTGCGCGTGCT CAAGCAGATGCTGAGTGAACGCCTGCTGACGGCCGTCTCGGTCGAGCCGAATGAGCAAGGTGTGGCGCTCATGGGCTCGC TGCAGGGCGAAGGCATGCTGGTCTACGAACGCATGCTGCAACGTTTCGAGAAGGACTATGAAACGGATTTCGTGTTGCAG GACCAGGTTTCAAGTGGTGCCGCAGGGCTGCCATTCGTGATCGTGCAGATCATTGCCGGCCCGCGTGGGCACCTGGTGAT GGAGGATGGCCGGCGCTTGCATGTCGGCGACAAGCTGGACGGCCTGCGCCTGGTACGCATCGATAACGAGCGCATCCTGT TCGATGGTGTCCGCCGTTATGAGGTGGCCTGGTGA Protein sequence : MYELRVLTGLHKGAALPLIGEQWLIGAEEGRDLALHDPGVETLHCRLQRAGDSWQLLAEEGAVLDGEGHSHASMEVLLDC PLVLGSVWVYLAAAESPWPTLPALVGHPGEDGDSKASAEVGERGRVRLLNRGTGIALGVLLGVMGSAWSLSWPVGSASGP AAVPTSEPAAVSDGRTLLQKDEAVRVLKQMLSERLLTAVSVEPNEQGVALMGSLQGEGMLVYERMLQRFEKDYETDFVLQ DQVSSGAAGLPFVIVQIIAGPRGHLVMEDGRRLHVGDKLDGLRLVRIDNERILFDGVRRYEVAW |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrpQ | ABQ88353.1 | HrpQ | Virulence | Hrp PAI | Protein | 3e-71 | 48 |
| hrpJ3 | AAA81941.1 | HrpJ3 | Virulence | Hrp PAI | Protein | 3e-71 | 48 |
| hrpQ | AAT96140.1 | HrpQ | Virulence | T-PAI | Protein | 1e-66 | 47 |
| hrpQ | AAT96194.1 | HrpQ | Virulence | T-PAI | Protein | 8e-67 | 47 |
| hrpQ | NP_791228.1 | type III secretion protein HrpQ | Virulence | Hrp PAI | Protein | 7e-70 | 47 |
| hrpQ | AAG33878.1 | HrpQ | Virulence | Hrp PAI | Protein | 5e-70 | 47 |
