Gene Information

Name : Pmen_3769 (Pmen_3769)
Accession : YP_001189249.1
Strain : Pseudomonas mendocina ymp
Genome accession: NC_009439
Putative virulence/resistance : Virulence
Product : ABC transporter-like protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 4158184 - 4158951 bp
Length : 768 bp
Strand : -
Note : PFAM: ABC transporter related; SMART: AAA ATPase

DNA sequence : 
ATGCTGACGCTGCGCGATATCGAAGTGCGCCGCGGCGAGCGGGTGACGCTGGCGCTGGACGAGCTGCAGCTGCAGGGCGA
TCGCTTCACCGTGATCCTCGGCCACAACGGCTCGGGCAAGTCGACCCTGATGAACCTGCTGGCGCGGCAGTTGCAGCCGA
CGCGCGGCACGCTGGCGCTGGACGAGCAGCCGCTAGCGCGCTTCTCCGCGCGTGACTTCGCCCGCCGCGTGGCCTTTCTG
CCGCAGCATCTGCCCGACGTGGCCGGCCTGACCGTGCGTGAGCTGGTGCGTCTGGGACGTTTTCCCTGGCGCGGGCTGGT
TGGTCGCTGGCGTGCCGACGACCACGCCGCCGTCGATCAGGCGCTGGCGCAGACCGATGTCGCCCATTACGCCGATCACC
TGGCCGACAGCCTGTCCGGCGGCGAGCGTCAGCGCGCCTGGATCGCCATGCTGCTGGCGCAGCAGTCGCCGCTGCTGCTG
CTCGACGAGCCGACCTCGGCGCTGGATCTGGCGCACCAGTACGAGCTGATGGGCCTGCTGCGCCAGCTTAACCGCGACAG
CGGGCGCGGTATCGTTGCCATCCTGCATGACATCAACCTCACCGCGCGGCATGCCGACCGGGTGATCGCCCTCAAGCAGG
GACGCATCTTCTTCGATGGCAGCCCGGACGAACTGCTCAGCGGGCCGCTGCTCAGCCAGCTTTACGAGATCGACATCCAG
CTGATCGAGCAGCCCGGCAGCGCGCGCAAGATCGCCGTGGTGGCCTGA

Protein sequence : 
MLTLRDIEVRRGERVTLALDELQLQGDRFTVILGHNGSGKSTLMNLLARQLQPTRGTLALDEQPLARFSARDFARRVAFL
PQHLPDVAGLTVRELVRLGRFPWRGLVGRWRADDHAAVDQALAQTDVAHYADHLADSLSGGERQRAWIAMLLAQQSPLLL
LDEPTSALDLAHQYELMGLLRQLNRDSGRGIVAILHDINLTARHADRVIALKQGRIFFDGSPDELLSGPLLSQLYEIDIQ
LIEQPGSARKIAVVA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 6e-39 43
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 6e-39 43
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 6e-39 43
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 6e-39 43
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 1e-37 42
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-39 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pmen_3769 YP_001189249.1 ABC transporter-like protein BAC0164 Protein 8e-38 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pmen_3769 YP_001189249.1 ABC transporter-like protein VFG1042 Protein 8e-38 42