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Name : Pmen_0039 (Pmen_0039) Accession : YP_001185545.1 Strain : Pseudomonas mendocina ymp Genome accession: NC_009439 Putative virulence/resistance : Virulence Product : HrcV family type III secretion protein Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4789 EC number : - Position : 37328 - 39412 bp Length : 2085 bp Strand : + Note : TIGRFAM: type III secretion protein, HrcV family; PFAM: type III secretion FHIPEP protein DNA sequence : ATGGGAGCGGTCATCGATTTTCTGAACGGTATCGCGCTGGCTGCCATGCGCCGCTCGGAGATCGTCGGCGCCTTCGTGGT CATCGCCATCATCTTCATGATGATCACGCCGATGCCCACGGAGCTGATGGATGTGCTGATCGCGATCAATATCTGCATTT CCTGCCTGATGATCATGCTGGCCATGCATCTGCCCCGGCCCCTGGCGTTCTCGACGTTTCCGGCGGTGCTGCTGCTGACC ACCATGTTTCGCCTGGCCCTGTCGATCTCCACCACGCGCCTGATCCTGCTCGAGCAGGACGCCGGGCACATCGTCGAGGC ATTCGGCGAGTTCGTCGTGGGTGGCAACCTGGCCGTCGGCGTGGTGATATTCCTGATCCTGACCATCGTCAACTTCCTCG TCATCACCAAGGGCTCGGAGCGGGTGGCGGAGGTCGGCGCGCGCTTTACCCTGGACGCCATGCCCGGCAAGCAGATGTCC ATCGACAGCGATCTGCGCGCCAACCTCATTTCGGTGAGCGAGGCGCGTAACCGCCGGGCCGAACTGAACAAGGAAAGCCA GCTGTTCGGCGCCATGGATGGGGCGATGAAGTTCGTTAACGGCGATGCGATCGCCAGCCTGATCATCATCGCCATCAACA TGATCGGCGGTATGGCCATCGGCGTGGCGCAAATGGGGATGAGCGCGGGCGATGCCTTGCAGGTGTACACCATCCTCACC ATTGGTGATGGCCTGGTTTCGCAGATCCCGGCGCTGATGATTTCTGTCACCGCCGGTATCGTCATCACCCGGGTGCCCAA CGAGCAGAGGCAGCAGACCAACATCGGCCGGGAGATCGCCGAGCAGCTGACCAGTCAGCCCAAGGCCTGGATCATCGCCT CGGTGGCCATGCTCGGTTTCGCCGCATTGCCGGGCATGCCCACCCTGACCTTCATCATCATCGCCATCATCTGTGGTTGC GGCGGCTTGTTGCAGTTGCAACGTGCGCGTACTTCCAGTGCGGCGGAGGATGATCCGGAAGTCATCCCTCCGGAGATGAA TGGTCAGGAGGACCTGCGTACCTTCTCGCCAAGTCGTCAGTTCGTGCTGCAATTTCATCCCAGCCAGGATGCGCATCAGG TCGCGGCCCTGCTCAGCGAGATTCGCCAGCGGCGCAACAGGCTGGTGGTGCAGTACGGCCTCACGTTGCCCTCGTTCATC ATCGAACAATCGCCGCTCCTGCCTCCGGACGAATTCCGTTTCTCGGTTTACGAGGTGCCTCTGTTCAAGGCCACGCTGAC GCAAAGCCAGTTGGCCGTGCCCGCACGCAGTCTGCCACCGGGGGCTGTTTGCGGTTCCAACGAGCGTCAGGAGGAAGACT GGGTATGGATGCCGGCCGATGATCCCATGCTGCAGAACGACGAGTTGGAGATCGTCAGCGCCGCGACGCTGATCGTCGAG CGCATGGAGCGTGCCATGCAGGCCTGCGGGCCGCAGTTCATCGGCTTACAGGAAACCAAGGCGATCCTCGGCTGGCTGGA ATCGGAGCAGCCCGAGCTTGCCCAGGAAATGCAGCGGGTACTGCCCTTGGCCAGGTTTTCCGCGATTCTCCAGCGTCTGG CCGCCGAATGCGTGCCGCTGCGCTCCGTTCGCCTGATCGCGGAGACCCTGATCGAGCACGCCCAGCACGAGCGAGATGTG ACTGTGCTGACCGACTACGTACGCATCGCCCTCAAGTCGCAGATCTACCACCAGTACTCGAGCGCGGAGGGCTTGCTGGT GTGGCTGCTGACCCCGGAAAGCGAAGGCATCCTGCGTGACGGCTTGCGTCAGACCCAGACCGAGACCTTCTTCGCCCTGA ACCATGAAACCAGCCAGCTACTGCTGCAACAACTGCACATGGCCTTTCCGATGCGGGCGCCTGAGCAGGCGGTGCTGCTG GTGCCGCAGGATCTGCGCAGCCCACTGCGCACGCTGCTGCAGGAGGAGTTTCACCATGTGCCGGTGCTGTCCTTCGCTGA AATCAGCAGCGCTGCTCGGATCAAGGTAATGGGTCGATTCGACCTGGAAGAGTCGGTGGCGCTGGACAATGACTACGCCG CTTGA Protein sequence : MGAVIDFLNGIALAAMRRSEIVGAFVVIAIIFMMITPMPTELMDVLIAINICISCLMIMLAMHLPRPLAFSTFPAVLLLT TMFRLALSISTTRLILLEQDAGHIVEAFGEFVVGGNLAVGVVIFLILTIVNFLVITKGSERVAEVGARFTLDAMPGKQMS IDSDLRANLISVSEARNRRAELNKESQLFGAMDGAMKFVNGDAIASLIIIAINMIGGMAIGVAQMGMSAGDALQVYTILT IGDGLVSQIPALMISVTAGIVITRVPNEQRQQTNIGREIAEQLTSQPKAWIIASVAMLGFAALPGMPTLTFIIIAIICGC GGLLQLQRARTSSAAEDDPEVIPPEMNGQEDLRTFSPSRQFVLQFHPSQDAHQVAALLSEIRQRRNRLVVQYGLTLPSFI IEQSPLLPPDEFRFSVYEVPLFKATLTQSQLAVPARSLPPGAVCGSNERQEEDWVWMPADDPMLQNDELEIVSAATLIVE RMERAMQACGPQFIGLQETKAILGWLESEQPELAQEMQRVLPLARFSAILQRLAAECVPLRSVRLIAETLIEHAQHERDV TVLTDYVRIALKSQIYHQYSSAEGLLVWLLTPESEGILRDGLRQTQTETFFALNHETSQLLLQQLHMAFPMRAPEQAVLL VPQDLRSPLRTLLQEEFHHVPVLSFAEISSAARIKVMGRFDLEESVALDNDYAA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcV | AAT96193.1 | HrcV | Virulence | T-PAI | Protein | 0.0 | 81 |
| hrcV | AAT96139.1 | HrcV | Virulence | T-PAI | Protein | 0.0 | 81 |
| hrcV | ABQ88352.1 | HrcV | Virulence | Hrp PAI | Protein | 0.0 | 78 |
| hrpI | AAA03015.1 | HrpI | Virulence | Hrp PAI | Protein | 0.0 | 78 |
| hrcV | AAG33877.1 | HrcV | Virulence | Hrp PAI | Protein | 0.0 | 78 |
| hrcV | NP_791229.1 | type III secretion protein HrcV | Virulence | Hrp PAI | Protein | 0.0 | 77 |
| hrcV | AAR25631.1 | type III secretion protein HrcV | Not tested | Not named | Protein | 0.0 | 71 |
| hrcV | AAT96337.1 | HrcV | Virulence | S-PAI | Protein | 0.0 | 65 |
| hrcV | ABA47273.1 | HrcV | Virulence | S-PAI | Protein | 0.0 | 65 |
| hrcV | AAT96297.1 | HrcV | Virulence | S-PAI | Protein | 0.0 | 65 |
| hrcV | AAT96256.1 | HrcV | Virulence | S-PAI | Protein | 0.0 | 65 |
| hrcV | AAB05999.2 | HrcV | Virulence | Hrp PAI | Protein | 0.0 | 63 |
| lssD | AAO18050.1 | LssD | Virulence | TTSS locus | Protein | 3e-108 | 43 |
| YPO0266 | YP_002345347.1 | secretion system apparatus protein SsaV | Virulence | Not named | Protein | 4e-97 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Pmen_0039 | YP_001185545.1 | HrcV family type III secretion protein | VFG0384 | Protein | 1e-108 | 43 |
| Pmen_0039 | YP_001185545.1 | HrcV family type III secretion protein | VFG0064 | Protein | 4e-111 | 42 |
