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Name : xerD (Pmen_3396) Accession : YP_001188880.1 Strain : Pseudomonas mendocina ymp Genome accession: NC_009439 Putative virulence/resistance : Unknown Product : site-specific tyrosine recombinase XerD Function : - COG functional category : L : Replication, recombination and repair COG ID : COG4974 EC number : - Position : 3752977 - 3753873 bp Length : 897 bp Strand : - Note : site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers d DNA sequence : ATGTCCACTCTGTCCCATCCCATGATCGAGCGATTTCTCGAGACGCTCTGGCTCGAGAAGGGCCTGTCCGCTCATACCCG TGCCGCCTATCGCAGCGATCTGGAGCACTTCAACCATTGGCTCGATGGTCGCGGTCTGCAGCTGCAGTGCATCGGGCGTG ATGCCATTCTCGATCACCTGGCCTGGCGCCTGGAGCAGGGCTATCAGGCGCGCTCCACGGCAAGGTTTCTCTCTGGCGTG CGCGGCTTCTATCGCTTTCTGCTGCGCGAAGGGGTTGTCGAAGAGGATCCCAGTCTGCAGGTGGAGCTGCCGCAGATCGG CAGGCCGCTGCCCAAATCGCTGTCCGAGGCGGATGTCGAGGCGCTGCTGCAGGCTCCGGATCTGGACGATCCCATAGGTC TGCGCGATCGCGCCATGCTCGAGGTGCTCTATGCCTGCGGGCTGCGCGTCAGCGAACTGGTCGGCTTGACTCTGGAGCAG GTCAACCTGCGCCAGGGCGTCCTGCGTGTGTTTGGCAAGGGCAGCAAGGAGCGGCTGGTGCCGCTGGGCGAGGAGGCCAT CGCCTGGATCGAGCGCTACAGTCGCGAGGCGCGGCCGCTGCTGCTGGGTGGCAAGCCGAGCGACGTCCTGTTTCCCAGCC TGCGTGGCGAGCAGATGACCCGGCAGACCTTCTGGCATCGGATCAAACATCAGGCGAAAGTGGCCGGCATCGGCAAGTCC CTGTCGCCGCATACCCTGCGTCATGCCTTCGCTACCCATCTGCTCAATCACGGCGCCGACCTGCGCGTGGTGCAGATGCT GCTGGGCCACAGCGACCTGTCCACCACGCAGATCTACACCCATATCGCTCGGGCGAGGTTGCAGGAGCTGCATGCCAAGC ACCATCCGCGCGGTTGA Protein sequence : MSTLSHPMIERFLETLWLEKGLSAHTRAAYRSDLEHFNHWLDGRGLQLQCIGRDAILDHLAWRLEQGYQARSTARFLSGV RGFYRFLLREGVVEEDPSLQVELPQIGRPLPKSLSEADVEALLQAPDLDDPIGLRDRAMLEVLYACGLRVSELVGLTLEQ VNLRQGVLRVFGKGSKERLVPLGEEAIAWIERYSREARPLLLGGKPSDVLFPSLRGEQMTRQTFWHRIKHQAKVAGIGKS LSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIARARLQELHAKHHPRG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00307 | YP_008207772.1 | Site-specific recombinase XerD | Not tested | AbaR25 | Protein | 2e-65 | 55 |
| BJAB0868_00311 | YP_008211637.1 | Site-specific recombinase XerD | Not tested | AbaR26 | Protein | 2e-65 | 55 |
