|
Name : Pmen_0033 (Pmen_0033) Accession : YP_001185540.1 Strain : Pseudomonas mendocina ymp Genome accession: NC_009439 Putative virulence/resistance : Virulence Product : sigma-54 dependent trancsriptional regulator Function : - COG functional category : K : Transcription COG ID : COG3829 EC number : - Position : 31594 - 32523 bp Length : 930 bp Strand : - Note : PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase DNA sequence : ATGAGTAGGGGGGTCGCCGCAGAAAAAAGTGCGCGCAGACATGGTGGTACGGACGTTCCCGAGTTGGGCATTACGCTATC TGCAGGACATTTCAGAATGGACCTGCTTCTGTGTGGGGAAACTGGAACTGGCAAAGATGTGCTGGCGAGGCACATCCACG ATCTGTCCGGCAGGACAGGCGCTTTCGTCGGCATAAACTGCGCCGCCATTCCGGAGGCATTGGCCGAAAGCCAGCTATTC GGTGTTGCCAGCGGTGCTTTCACTGGGGCCAACCGGTCACGCCAGGGTTATATCGAAGCCTCGAACGACGGTACGCTGTA CCTCGACGAGATCGACAGCATGCCCCTGCAACTACAGGCGAAGCTGCTGCGCGTGCTTGAGACCCGTGGCGTCGAACGCT TGGGCACGACGAAATTCATCCCTCTCAATCTGCGGATCATCGCCTCGACGCAACGCCCTCTCGAAGAGCTGGTGGAGCAG GGACTGTTTCGCCGCGACCTGCTTTTCCGGCTCAATGCAATGACGCTGTCATTGCCTCCCTTGCGCCAGCGGCGCGAGTT GATCCTGCCGCTGTTCAAGCGATTCACCCGAAGCCTTGGCGCGAAGCAGGCAAATGGCGCACAAGCCCTGGACTCTCAAC TGATCCAGCTACTGCTCAGCCACCCCTGGCCGGGCAATATCCGTGAACTGAAGTCCGCCGCCAAACGCTACGTGATAGGA CTGCCGCCTATCGATGCCGGCGTCCTTGCTGATCTCGAAGACGGTGATTTTCCCCACGACAGGGGGCTCAAGAAGCGCAT GCGCGCTGTGGAGAAAATGCTCATTCAGGACGCCTTGAAGCGTCACAAGAACGGTCTGGAGGCAGTCGCCGAGGAGCTCG GCATATCCCGTCGTACCCTGTATCAGCGAATAAAGGAACTTGACGTCTAG Protein sequence : MSRGVAAEKSARRHGGTDVPELGITLSAGHFRMDLLLCGETGTGKDVLARHIHDLSGRTGAFVGINCAAIPEALAESQLF GVASGAFTGANRSRQGYIEASNDGTLYLDEIDSMPLQLQAKLLRVLETRGVERLGTTKFIPLNLRIIASTQRPLEELVEQ GLFRRDLLFRLNAMTLSLPPLRQRRELILPLFKRFTRSLGAKQANGAQALDSQLIQLLLSHPWPGNIRELKSAAKRYVIG LPPIDAGVLADLEDGDFPHDRGLKKRMRAVEKMLIQDALKRHKNGLEAVAEELGISRRTLYQRIKELDV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrpR | AAC35799.1 | transcriptional regulator | Virulence | Hrp PAI | Protein | 3e-89 | 64 |
| hrpR | NP_791206.1 | type III transcriptional regulator HrpR | Virulence | Hrp PAI | Protein | 1e-94 | 63 |
| hrpR | AAC34752.1 | HrpR | Virulence | Hrp PAI | Protein | 2e-94 | 63 |
| hrpR | AAT96162.1 | HrpR | Virulence | T-PAI | Protein | 1e-91 | 62 |
| hrpR | AAT96216.1 | HrpR | Virulence | T-PAI | Protein | 1e-91 | 62 |
| hrpR | ABQ88368.1 | HrpR | Virulence | Hrp PAI | Protein | 2e-89 | 61 |
| hrpR | AAA17651.1 | positive regulatory factor | Not tested | Hrp PAI | Protein | 2e-89 | 61 |
| hrpS | AAT96161.1 | HrpS | Virulence | T-PAI | Protein | 7e-80 | 60 |
| hrpS | AAT96215.1 | HrpS | Virulence | T-PAI | Protein | 7e-80 | 60 |
| hrpS | AAA17650.1 | positive regulatory factor | Not tested | Hrp PAI | Protein | 3e-76 | 59 |
| hrpS | AAC35800.1 | transcriptional regulator | Virulence | Hrp PAI | Protein | 3e-77 | 59 |
| hrpS | ABQ88367.1 | HrpS | Virulence | Hrp PAI | Protein | 3e-76 | 59 |
| hrpRS | ABA47311.1 | HrpRS | Virulence | S-PAI | Protein | 8e-77 | 58 |
| unnamed | AAT96283.1 | HrpS/HrpR-like protein | Not tested | S-PAI | Protein | 5e-79 | 58 |
| unnamed | AAT96324.1 | HrpS/HrpR-like protein | Virulence | S-PAI | Protein | 5e-79 | 58 |
| hrpS | NP_791207.1 | type III transcriptional regulator HrpS | Virulence | Hrp PAI | Protein | 7e-77 | 57 |
| hrpS | AAC34753.1 | HrpS | Virulence | Hrp PAI | Protein | 4e-75 | 57 |
| unnamed | AAT96363.1 | HrpS/HrpR-like protein | Virulence | S-PAI | Protein | 2e-78 | 57 |
| hrpS | AAD24684.1 | sigma-54-dependent enhancer-binding protein HrpS | Virulence | Hrp PAI | Protein | 1e-72 | 54 |
