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Name : Pmen_0032 (Pmen_0032) Accession : YP_001185539.1 Strain : Pseudomonas mendocina ymp Genome accession: NC_009439 Putative virulence/resistance : Virulence Product : sigma-54 dependent trancsriptional regulator Function : - COG functional category : K : Transcription COG ID : COG3829 EC number : - Position : 30305 - 31210 bp Length : 906 bp Strand : - Note : PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase DNA sequence : ATGAGTGAGTTCGATTGGCCGGATGCTTTTTGGATGAATGACGGTGGTTTACCCAATCTCGAAGTCGTGGCAAGCAGCAT CTCCGAACTGAATATCGATGTCCTGCTTACCGGCGAAACCGGTTCTGGCAAGGACACACTTGCGCAATACCTGCACAAGC TGTCCGGACGCAAAGGCCCATTCGTGGCAATGAACTGCGCAGCAATTCCGGAATCTCTGTTCGAGAGCGAGCTGTTCGGT GTGACCAGCGGCGCCTACACCGGCGCTGATCACTCCAGAATGGGCTATGTGGAGGCCGCCCAGGGCGGCACGCTGTACCT CGACGAAATCGACAGCATGCCCGCGTTCCTGCAAGCCAAGCTCCTGCGGGTGCTGGAGACCCGCCAGATCGAACGCCTGG GGTCGACCACGCCAGTCCCCTTGGATATCTGCGTCGTGGCCTCCGCGCAACGCTCGTTGGACGCCTTGGTCGAGCAGGGC GAGTTTCGCCGGGATCTCTACTTCCGCCTCAATGTCCTGACGCTGAGGCTGCCCGCGCTGAGACAGAAGCGCGAGTGGAT CATCCCGATGTTCGAGCGCTTCGCATTCGAGGCCTCGCAGGACATGGACACGGCGCTACCGGTCATCGACCCTGCCATCG AACATGTACTGCTGAACCATGACTGGCCCGGTAATCTCCGCGAGCTCAAATCTGCGGCGAAGCGCCACGTGCTGGGTATA AACCTTTTGGGTATAGAAGCCGAACAGCCCATCGAGTGCGATCTCAAGTGCCAACTCCGGCTGATCGAAAAGGTGTTGAT CCAGGAATCCCTGCAGCGCCACGAACATTGCATCGAGGCCGTGCTCCACGAGTTGGACATTCCCCGGCGCACGCTCTATC ACCGCATGAAAGAGCTCGATGTCTGA Protein sequence : MSEFDWPDAFWMNDGGLPNLEVVASSISELNIDVLLTGETGSGKDTLAQYLHKLSGRKGPFVAMNCAAIPESLFESELFG VTSGAYTGADHSRMGYVEAAQGGTLYLDEIDSMPAFLQAKLLRVLETRQIERLGSTTPVPLDICVVASAQRSLDALVEQG EFRRDLYFRLNVLTLRLPALRQKREWIIPMFERFAFEASQDMDTALPVIDPAIEHVLLNHDWPGNLRELKSAAKRHVLGI NLLGIEAEQPIECDLKCQLRLIEKVLIQESLQRHEHCIEAVLHELDIPRRTLYHRMKELDV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrpS | NP_791207.1 | type III transcriptional regulator HrpS | Virulence | Hrp PAI | Protein | 1e-95 | 67 |
| hrpS | AAC35800.1 | transcriptional regulator | Virulence | Hrp PAI | Protein | 3e-94 | 67 |
| hrpS | AAT96161.1 | HrpS | Virulence | T-PAI | Protein | 2e-91 | 67 |
| hrpS | AAT96215.1 | HrpS | Virulence | T-PAI | Protein | 2e-91 | 67 |
| hrpS | AAA17650.1 | positive regulatory factor | Not tested | Hrp PAI | Protein | 2e-93 | 67 |
| hrpS | ABQ88367.1 | HrpS | Virulence | Hrp PAI | Protein | 2e-93 | 67 |
| hrpS | AAC34753.1 | HrpS | Virulence | Hrp PAI | Protein | 3e-92 | 66 |
| hrpR | AAT96162.1 | HrpR | Virulence | T-PAI | Protein | 6e-84 | 65 |
| hrpR | AAT96216.1 | HrpR | Virulence | T-PAI | Protein | 6e-84 | 65 |
| hrpR | NP_791206.1 | type III transcriptional regulator HrpR | Virulence | Hrp PAI | Protein | 4e-82 | 63 |
| hrpR | AAC34752.1 | HrpR | Virulence | Hrp PAI | Protein | 1e-81 | 63 |
| hrpR | ABQ88368.1 | HrpR | Virulence | Hrp PAI | Protein | 8e-76 | 61 |
| hrpR | AAA17651.1 | positive regulatory factor | Not tested | Hrp PAI | Protein | 8e-76 | 61 |
| hrpR | AAC35799.1 | transcriptional regulator | Virulence | Hrp PAI | Protein | 3e-81 | 60 |
| unnamed | AAT96283.1 | HrpS/HrpR-like protein | Not tested | S-PAI | Protein | 4e-76 | 57 |
| unnamed | AAT96324.1 | HrpS/HrpR-like protein | Virulence | S-PAI | Protein | 4e-76 | 57 |
| hrpRS | ABA47311.1 | HrpRS | Virulence | S-PAI | Protein | 3e-77 | 57 |
| unnamed | AAT96363.1 | HrpS/HrpR-like protein | Virulence | S-PAI | Protein | 2e-75 | 56 |
| hrpS | AAD24684.1 | sigma-54-dependent enhancer-binding protein HrpS | Virulence | Hrp PAI | Protein | 3e-63 | 52 |
