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Name : Pmen_2925 (Pmen_2925) Accession : YP_001188412.1 Strain : Pseudomonas mendocina ymp Genome accession: NC_009439 Putative virulence/resistance : Virulence Product : general secretory pathway protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 3234354 - 3235841 bp Length : 1488 bp Strand : - Note : TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E DNA sequence : ATGAACGCTTCGCTGCTCGAAACTCCCCTGCGCCGCCTGCCCTTCAGCTTTGCCAAGCGTCACGGCGTGGTGTTCATGCT CCACGAGGGGCAGGCCTGCCTGGGCCATCGGGCCGATTGCGACCCCGTGGCGCTGGCCGAGGCGCAGCGCTTTGCCGGAC GTGCCCTGCCGCTGCAGCTGTTGGCTCCCAGCGAGTTCGCCCAGGTGCTGGGCACGGCCTATCAGCACGATTCGGCGTCC ATGCAGCTGGCCGAGGACATCGGCGGCAGCTTCGATCTGGCCTCGCTGGCCGACCAGGTGCCGGAAACCGAAGACCTGCT GGAGCAGGAGGACGACGCGCCGATCATCCGTCTGATCAACGCCATCCTCGGCGAAGCGATCAAGGAGAACGCCTCCGACA TCCACCTGGAGACCTTCGAGAAACGCCTGGTGGTACGTTTTCGCGTCGACGGCATTCTCCGCGAGGTGCTCGAGCCCAAG CGCGAGCTGGCGGCGCTGCTGGTCTCGCGGGTCAAGGTGATGGCTCGGCTGGACATCGCCGAGAAGCGCGTGCCGCAGGA CGGACGCATCTCGCTCAAGGTGGGCGGGCGCGAGGTGGACATCCGCGTCTCCACGCTGCCTTCGGCCAACGGCGAGCGGG TGGTGCTGCGTCTGCTCGACAAGCAGGCCGGGCGCCTGTCGCTGCAGCACCTGGGCATGCGCGCCGAGGACCGCGCGCTG ATGGAGGAGACGGTGCGCAAACCGCACGGCATCCTGCTGGTCACCGGCCCCACCGGCTCGGGCAAGACCACCACCCTCTA CGCCAGTCTGGTCAGCCTCAACGACCACACGCGCAACATCCTCACGGTCGAGGATCCCATCGAATATCACCTCGAAGGCA TCGGCCAGACCCAGGTCAACGCCAAGGTGGACATGACCTTCGCCCGTGGCCTGCGCGCCATCCTGCGTCAGGACCCGGAC GTGGTGATGGTCGGCGAGATCCGCGACAAGGAAACTGCCGAGATCGCCGTGCAGGCCTCGCTCACCGGTCACCTGGTGCT TTCGACCTTGCACACCAACAGCGCCATCGGCGCCATTACCCGTCTGGTGGACATGGGCGTGGAGCCCTTCCTGCTGTCCT CGTCGCTGCTCGGTGTGCTGGCCCAGCGCCTGGTACGGGTACTGTGCCCGGCGTGCAAGGAACCATATCCGGCCGATGCG GCCGAATGTACGCTGCTGGGCGTGCCGGCCAGCCCGCCGCCGACGCTCTACCATGCGCGCGGCTGTGCCCAGTGCCACCA GCAGGGCTATCGCGGGCGTACCGGCATCTACGAGCTGGTGGTGTTCGACGAGACCATGCGCACCCTGGTGCACAGCCGTG CCTCGGAGCAGGACATGACCCGCCACGCGCGCACGCTCGGCCCGAGCATTCGCGACGATGGCCGGCGCAAGGTGCTCGAA GGGGTGACCACGGTGGAAGAAGTGCTGCGGGTGACGCGCGAGGAATGA Protein sequence : MNASLLETPLRRLPFSFAKRHGVVFMLHEGQACLGHRADCDPVALAEAQRFAGRALPLQLLAPSEFAQVLGTAYQHDSAS MQLAEDIGGSFDLASLADQVPETEDLLEQEDDAPIIRLINAILGEAIKENASDIHLETFEKRLVVRFRVDGILREVLEPK RELAALLVSRVKVMARLDIAEKRVPQDGRISLKVGGREVDIRVSTLPSANGERVVLRLLDKQAGRLSLQHLGMRAEDRAL MEETVRKPHGILLVTGPTGSGKTTTLYASLVSLNDHTRNILTVEDPIEYHLEGIGQTQVNAKVDMTFARGLRAILRQDPD VVMVGEIRDKETAEIAVQASLTGHLVLSTLHTNSAIGAITRLVDMGVEPFLLSSSLLGVLAQRLVRVLCPACKEPYPADA AECTLLGVPASPPPTLYHARGCAQCHQQGYRGRTGIYELVVFDETMRTLVHSRASEQDMTRHARTLGPSIRDDGRRKVLE GVTTVEEVLRVTREE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 2e-137 | 62 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 1e-137 | 62 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Pmen_2925 | YP_001188412.1 | general secretory pathway protein E | VFG0182 | Protein | 0.0 | 85 |
| Pmen_2925 | YP_001188412.1 | general secretory pathway protein E | VFG2048 | Protein | 1e-137 | 62 |
| Pmen_2925 | YP_001188412.1 | general secretory pathway protein E | VFG1876 | Protein | 3e-129 | 58 |
| Pmen_2925 | YP_001188412.1 | general secretory pathway protein E | VFG2426 | Protein | 1e-75 | 50 |
| Pmen_2925 | YP_001188412.1 | general secretory pathway protein E | VFG0112 | Protein | 1e-79 | 43 |
