Gene Information

Name : Pmen_2862 (Pmen_2862)
Accession : YP_001188349.1
Strain : Pseudomonas mendocina ymp
Genome accession: NC_009439
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : J : Translation, ribosomal structure and biogenesis
COG ID : COG1670
EC number : -
Position : 3143507 - 3144493 bp
Length : 987 bp
Strand : -
Note : -

DNA sequence :
ATGAATGCATTGCCACTGCCTGACGGCCGCGTGCTGCAAGGCGAGTCGCGCGACTCTGCGATCTGGCTGTCCTGCGACGG
TCGGCCGCTGATGCAGCTACGCACGCTTGACGCCAATACTGTGCGGCTGCTGGAGGTGACCACGGACGATCTGGCCGATG
CGCTGTGGTGCGCCAGCTACTGGTGGCTCGCCGCTCATCCGCAGGCGCCACGTCTGGTCTGGGAGGGGTTGGATCAGCAC
GTGCTGCAGGCCTGTGGCGACTGGCTGCGCAACGACGCCGGTAGCGCCAGTGCGCAGGTCGAGCGCAGCCTGTTCTGGCA
AGTGCCGCAGCCCTGGCTGCGCCAGGCACTGCCGCCTTATCCGCAGCGGATGGTGATGAGCGACGGCAAACGTCATCCGC
GGCGCCGCGCCAAGCCCCAGGGCGAGGTCTACCGGCGTTTCGATGCGCGCCTGGGCGCCTGGATATCCCTGCGTACGCTG
GACATCGAACAGGACCTGGAGCGCTTCAATCGCTGGCAGAACACGCCGCGCGTTCTGCATTTCTGGCAGGAGGGTGGCGA
TCTGGCCCAGCACCGCAGCTATCTCGAGACCATCGCTGCCGATCCGCATGTCTGCAGTCTGATCGGCTGCTTCGACGATC
AGCCCTTCGCCTACTTCGAGCTCTACTGGGCCAAGGAAGACCGCATTGCGCCTTTCTATGTCGCGGACGACTATGATCGC
GGCATCCACATGCTGGTGGGTGAGCAGGCCCATCGCGGGCCGCACAAGGTGGCCAGCTGGCTGGCGGCGCTGACCCATTA
CGCCTTTCTCGACGATCCGCGCACCCGTCTGGTGGTAGCCGAGCCGCGCGCCGACAACGCGAAGATGATCGGCTATATGC
AAACGCTGGGTTACTACCGGGAAAAGGAGTTCGACTTCCCTCACAAGCGCGCGGCGCTGATGGCCATCGGTCGCGAGCGC
TTTTTTGATAGCGGGGTACTGTGTTGA

Protein sequence :
MNALPLPDGRVLQGESRDSAIWLSCDGRPLMQLRTLDANTVRLLEVTTDDLADALWCASYWWLAAHPQAPRLVWEGLDQH
VLQACGDWLRNDAGSASAQVERSLFWQVPQPWLRQALPPYPQRMVMSDGKRHPRRRAKPQGEVYRRFDARLGAWISLRTL
DIEQDLERFNRWQNTPRVLHFWQEGGDLAQHRSYLETIAADPHVCSLIGCFDDQPFAYFELYWAKEDRIAPFYVADDYDR
GIHMLVGEQAHRGPHKVASWLAALTHYAFLDDPRTRLVVAEPRADNAKMIGYMQTLGYYREKEFDFPHKRAALMAIGRER
FFDSGVLC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iucB NP_709455.1 siderophore biosynthesis protein Virulence SHI-2 Protein 2e-48 47
iucB YP_002414045.1 aerobactin siderophore biosynthesis protein, N(6)-hydroxylysine acetylase Virulence Not named Protein 2e-48 47
iucB AAK71632.1 IucB Virulence SHI-3 Protein 1e-48 47
iucB AAD44747.1 IucB Virulence SHI-2 Protein 1e-48 47
iucB NP_839222.1 siderophore biosynthesis protein Virulence SHI-2 Protein 2e-48 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pmen_2862 YP_001188349.1 hypothetical protein VFG1082 Protein 8e-49 47
Pmen_2862 YP_001188349.1 hypothetical protein VFG0939 Protein 8e-49 47
Pmen_2862 YP_001188349.1 hypothetical protein VFG0616 Protein 8e-49 47