Gene Information

Name : Pmen_2860 (Pmen_2860)
Accession : YP_001188347.1
Strain : Pseudomonas mendocina ymp
Genome accession: NC_009439
Putative virulence/resistance : Virulence
Product : ABC transporter-like protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 3141964 - 3142731 bp
Length : 768 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: AAA ATPase

DNA sequence : 
ATGTTCGAATTGCAAAGCGTCAGTTTCAGCATTCCTGAACGTACCCTGCTGCATCCCCTGAACCTGCACATCGATGCCGG
GCGCATGGTCGGCCTGATCGGCCACAACGGTTCAGGCAAGTCCACCCTGATCAAACTGCTTGCCCGCCAGCAGTCGCCCA
GCGGCGGCCATATCCTGCTCGACGGTAAACCGCTGCAGGCATGGGGCCAGCGCGACTTCGCCCGGCAGGTGGCGTACCTG
CCCCAGCAACTGCCGCAGACCGAAGGCCTGAGCGTACGCGAGCTGGTGGGCTTCGGCCGGTATCCCTGGCACGGCGCCCT
TGGCCGCCTGGGCAGCGAAGACCGCGCGCACATCGAGCGCGCGCTGGACCTGACCGACACCGGCATGTTTGCCGATCGCC
TGGTCGACCAGCTCTCCGGCGGCGAGCGCCAGCGCGTCTGGCTGGCCATGCTGCTGGCGCAGAACACCCGCTACCTGCTG
CTCGACGAACCCACCTCGGCGCTGGACATCGCCCACCAGGTGGAAGTCCTCTCACGGGTTCACGACCTCAGCCGCGAGCT
GGGACTCGGCGTGCTGGTAGTGCTGCACGACATCAACATGGCTGCACGCTATTGTGATCACCTGCTGGCCCTGCACAGCG
GGCGCCTGCTGGCGCAGGGCAGTCCGGCCGAGCTGATGCACGGCGAAACCCTGGAGCGCATCTACGGCGTACCCATGGGA
GTGATGGCCAATCCGGTGGACGGCTCGCCGATCAGCTACCTGCACTGA

Protein sequence : 
MFELQSVSFSIPERTLLHPLNLHIDAGRMVGLIGHNGSGKSTLIKLLARQQSPSGGHILLDGKPLQAWGQRDFARQVAYL
PQQLPQTEGLSVRELVGFGRYPWHGALGRLGSEDRAHIERALDLTDTGMFADRLVDQLSGGERQRVWLAMLLAQNTRYLL
LDEPTSALDIAHQVEVLSRVHDLSRELGLGVLVVLHDINMAARYCDHLLALHSGRLLAQGSPAELMHGETLERIYGVPMG
VMANPVDGSPISYLH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 9e-46 43
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 1e-43 41
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 4e-38 41
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 4e-35 41
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 4e-35 41
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 4e-35 41
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 4e-35 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pmen_2860 YP_001188347.1 ABC transporter-like protein BAC0164 Protein 8e-44 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pmen_2860 YP_001188347.1 ABC transporter-like protein VFG0925 Protein 7e-44 43
Pmen_2860 YP_001188347.1 ABC transporter-like protein VFG1042 Protein 8e-44 41