|
Name : Pmen_0029 (Pmen_0029) Accession : YP_001185536.1 Strain : Pseudomonas mendocina ymp Genome accession: NC_009439 Putative virulence/resistance : Virulence Product : YscI/HrpB family type III secretion apparatus protein Function : - COG functional category : - COG ID : - EC number : - Position : 28353 - 28721 bp Length : 369 bp Strand : - Note : TIGRFAM: type III secretion apparatus protein, YscI/HrpB family DNA sequence : ATGAGCATTTCCAAGATAGACGGACTGACGAGTCCCGACTTGAAGCTCGACCAGGGACTGGTCAGTGAGCCTTCTCAGGC AGATGTCGATCTCTTTTCCAGCTTGATGCGAGACAACGGCAACACGGCTGACCAGCCCAGCCACCTGGCGGCCGTTATCG CCGAGACGGTGAATGCACGGATGACGTCTGTGGATGACCTCTCGCGGCAAGCCATGCGCCACATGAAGGAGGCCGTGACC GGCAACGATGTAAGCGCCATCACGGATATGAGCCGTGCCCTCTCGCAGTACTCGCTGCAAATGGCGGTAACGACCAAGGT GGTCAGCAAGACAGGGCAGGCACTCGAAAAACTGACCAACATGCAGTAG Protein sequence : MSISKIDGLTSPDLKLDQGLVSEPSQADVDLFSSLMRDNGNTADQPSHLAAVIAETVNARMTSVDDLSRQAMRHMKEAVT GNDVSAITDMSRALSQYSLQMAVTTKVVSKTGQALEKLTNMQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrpB | NP_791210.1 | type III secretion protein HrpB | Virulence | Hrp PAI | Protein | 1e-24 | 53 |
| hrpB | AAB00128.1 | HrpB | Virulence | Hrp PAI | Protein | 1e-24 | 53 |
| hrpB | AAT96158.1 | HrpB | Virulence | T-PAI | Protein | 2e-21 | 50 |
| hrpB | AAT96212.1 | HrpB | Virulence | T-PAI | Protein | 2e-21 | 50 |
| hrpB | AAB05079.2 | HrpB | Virulence | Hrp PAI | Protein | 7e-21 | 47 |
| hrpB | AAB00137.1 | - | Virulence | Hrp PAI | Protein | 2e-20 | 45 |
