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Name : Pmen_0028 (Pmen_0028) Accession : YP_001185535.1 Strain : Pseudomonas mendocina ymp Genome accession: NC_009439 Putative virulence/resistance : Virulence Product : YscJ/HrcJ family type III secretion apparatus lipoprotein Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4669 EC number : - Position : 27524 - 28342 bp Length : 819 bp Strand : - Note : TIGRFAM: type III secretion apparatus lipoprotein, YscJ/HrcJ family; PFAM: secretory protein YscJ/FliF family protein DNA sequence : GTGAAATGGACGCTCTCCATTGTCGCCCTGTGCCTGCTTCTGTTGAGCGGGTGCAGTGATCGCACCGACCTGTTCAGCGG TCTTTCCGAACTCGATGCCAATGAGGTCATTGCCTCCCTCGGTGAACACCGCATCAGCGCGCGCAAACGCGCGGAGAAGG CGGGTGTGGTGGTGACCGTCGACACCGCAGAGATCAATCGAGCGGTGCGTGTACTGGAAGCAGCCGGGTTACCACGCCGG GCTCGGACCAGCCTGGGTGAAATATTCAAGAAGGAAGGCGTGATCTCCACGCCGCTGGAAGAACGCGCCCGGTACATCTA TGCGCTGTCGCAAGAACTGGAATCGACGCTCTCGCAAATCGATGGCGTCATCGTCGCCCGTGTTCACGTCGTGCTGCCCG AGCGCATTGCGCCAGGCGAACCGGTACAGCCGGCATCGGCTGCGGTCTTCATCAAGCATGCCGCCAGCCTGGAGCCCGAT GCCGTGCAACGACGGATTCAGCAGATGGTGGTCAGTAGCATCCCCGGCCTGGCCAGTACGGGGGTCGAGAGCAGCGAGAA GTTCTCCATCGTCTTCGTCCCGGCCGCCGAGCTTCAGGATGCAGATACTTTGGTGCCGTTCGGGCCCTTTCTGATCGAAA GCCAGAAACTGGGATTCTGGCAGCTCATGTCCTGGCTCATCCCCCTGGGAGGCCTGCTGCTATTGGCGGTCCTGACACTG CTGGTACGCCAGGACTGGCGCTCGGTATTGCTCCGTCGAGTACGGCCACGACAGCCGGCCAGCCATAACGTCTCGACACT GCCGAGCCGCGTCGCATGA Protein sequence : MKWTLSIVALCLLLLSGCSDRTDLFSGLSELDANEVIASLGEHRISARKRAEKAGVVVTVDTAEINRAVRVLEAAGLPRR ARTSLGEIFKKEGVISTPLEERARYIYALSQELESTLSQIDGVIVARVHVVLPERIAPGEPVQPASAAVFIKHAASLEPD AVQRRIQQMVVSSIPGLASTGVESSEKFSIVFVPAAELQDADTLVPFGPFLIESQKLGFWQLMSWLIPLGGLLLLAVLTL LVRQDWRSVLLRRVRPRQPASHNVSTLPSRVA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcJ | NP_791211.1 | type III secretion protein HrcJ | Virulence | Hrp PAI | Protein | 3e-74 | 71 |
| hrpC | AAB00129.1 | HrpC | Virulence | Hrp PAI | Protein | 2e-74 | 71 |
| hrcJ | AAB05080.1 | HrcJ | Virulence | Hrp PAI | Protein | 7e-74 | 71 |
| hrcJ | AAT96211.1 | HrcJ | Virulence | T-PAI | Protein | 2e-71 | 68 |
| hrcJ | AAT96157.1 | HrcJ | Virulence | T-PAI | Protein | 2e-71 | 68 |
| hrcJ | AAC35801.1 | putative hrp type III secretion pathway protein | Virulence | Hrp PAI | Protein | 2e-73 | 68 |
| hrcJ | AAB49174.1 | HrcJ | Virulence | Hrp PAI | Protein | 1e-57 | 66 |
| hrcJ | AAT96359.1 | HrcJ | Virulence | S-PAI | Protein | 1e-56 | 64 |
| hrcJ | AAT96279.1 | HrcJ | Virulence | S-PAI | Protein | 1e-56 | 64 |
| hrcJ | AAT96320.1 | HrcJ | Virulence | S-PAI | Protein | 1e-56 | 64 |
| hrcJ | ABA47308.1 | HrcJ | Virulence | S-PAI | Protein | 2e-57 | 63 |
| lscJ | AAO18027.1 | LscJ | Virulence | TTSS locus | Protein | 4e-29 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Pmen_0028 | YP_001185535.1 | YscJ/HrcJ family type III secretion apparatus lipoprotein | VFG0218 | Protein | 6e-30 | 45 |
