Gene Information

Name : Pmen_0028 (Pmen_0028)
Accession : YP_001185535.1
Strain : Pseudomonas mendocina ymp
Genome accession: NC_009439
Putative virulence/resistance : Virulence
Product : YscJ/HrcJ family type III secretion apparatus lipoprotein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4669
EC number : -
Position : 27524 - 28342 bp
Length : 819 bp
Strand : -
Note : TIGRFAM: type III secretion apparatus lipoprotein, YscJ/HrcJ family; PFAM: secretory protein YscJ/FliF family protein

DNA sequence :
GTGAAATGGACGCTCTCCATTGTCGCCCTGTGCCTGCTTCTGTTGAGCGGGTGCAGTGATCGCACCGACCTGTTCAGCGG
TCTTTCCGAACTCGATGCCAATGAGGTCATTGCCTCCCTCGGTGAACACCGCATCAGCGCGCGCAAACGCGCGGAGAAGG
CGGGTGTGGTGGTGACCGTCGACACCGCAGAGATCAATCGAGCGGTGCGTGTACTGGAAGCAGCCGGGTTACCACGCCGG
GCTCGGACCAGCCTGGGTGAAATATTCAAGAAGGAAGGCGTGATCTCCACGCCGCTGGAAGAACGCGCCCGGTACATCTA
TGCGCTGTCGCAAGAACTGGAATCGACGCTCTCGCAAATCGATGGCGTCATCGTCGCCCGTGTTCACGTCGTGCTGCCCG
AGCGCATTGCGCCAGGCGAACCGGTACAGCCGGCATCGGCTGCGGTCTTCATCAAGCATGCCGCCAGCCTGGAGCCCGAT
GCCGTGCAACGACGGATTCAGCAGATGGTGGTCAGTAGCATCCCCGGCCTGGCCAGTACGGGGGTCGAGAGCAGCGAGAA
GTTCTCCATCGTCTTCGTCCCGGCCGCCGAGCTTCAGGATGCAGATACTTTGGTGCCGTTCGGGCCCTTTCTGATCGAAA
GCCAGAAACTGGGATTCTGGCAGCTCATGTCCTGGCTCATCCCCCTGGGAGGCCTGCTGCTATTGGCGGTCCTGACACTG
CTGGTACGCCAGGACTGGCGCTCGGTATTGCTCCGTCGAGTACGGCCACGACAGCCGGCCAGCCATAACGTCTCGACACT
GCCGAGCCGCGTCGCATGA

Protein sequence :
MKWTLSIVALCLLLLSGCSDRTDLFSGLSELDANEVIASLGEHRISARKRAEKAGVVVTVDTAEINRAVRVLEAAGLPRR
ARTSLGEIFKKEGVISTPLEERARYIYALSQELESTLSQIDGVIVARVHVVLPERIAPGEPVQPASAAVFIKHAASLEPD
AVQRRIQQMVVSSIPGLASTGVESSEKFSIVFVPAAELQDADTLVPFGPFLIESQKLGFWQLMSWLIPLGGLLLLAVLTL
LVRQDWRSVLLRRVRPRQPASHNVSTLPSRVA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcJ NP_791211.1 type III secretion protein HrcJ Virulence Hrp PAI Protein 3e-74 71
hrpC AAB00129.1 HrpC Virulence Hrp PAI Protein 2e-74 71
hrcJ AAB05080.1 HrcJ Virulence Hrp PAI Protein 7e-74 71
hrcJ AAT96157.1 HrcJ Virulence T-PAI Protein 2e-71 68
hrcJ AAT96211.1 HrcJ Virulence T-PAI Protein 2e-71 68
hrcJ AAC35801.1 putative hrp type III secretion pathway protein Virulence Hrp PAI Protein 2e-73 68
hrcJ AAB49174.1 HrcJ Virulence Hrp PAI Protein 1e-57 66
hrcJ AAT96320.1 HrcJ Virulence S-PAI Protein 1e-56 64
hrcJ AAT96359.1 HrcJ Virulence S-PAI Protein 1e-56 64
hrcJ AAT96279.1 HrcJ Virulence S-PAI Protein 1e-56 64
hrcJ ABA47308.1 HrcJ Virulence S-PAI Protein 2e-57 63
lscJ AAO18027.1 LscJ Virulence TTSS locus Protein 4e-29 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pmen_0028 YP_001185535.1 YscJ/HrcJ family type III secretion apparatus lipoprotein VFG0218 Protein 6e-30 45