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Name : Pmen_2568 (Pmen_2568) Accession : YP_001188056.1 Strain : Pseudomonas mendocina ymp Genome accession: NC_009439 Putative virulence/resistance : Virulence Product : TRAP dicarboxylate transporter subunit DctM Function : - COG functional category : G : Carbohydrate transport and metabolism COG ID : COG1593 EC number : - Position : 2829898 - 2831175 bp Length : 1278 bp Strand : - Note : TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit DNA sequence : ATGACCGTCGCCGTCTTCCTTACATCCCTGCTGGGTTTCATGGCCTTCGGCATGCCCATCGCCTTCGCCCTGATCCTCAC CGCCGCCGTGCTGATGTGGTACCTGGGCTTCTGGGACGTGCAGCTGCTGGCGCAGAACCTGCTCGCCGGCGCCGACAGCT TCCCGCTGCTGGCCGTGCCCTTCTTCATCCTCGCCGGCGAATTGATGAACGCCGGCGGCATCTCGCGGCGCATCATCGCC ATGGCCCAGGCTTATTTCGGCCATCTGCGCGGCGGCCTCGGTTACGTCGCCATCGCTGCCGCGGTGTTGCTGGCGAGCAT GTCCGGCTCGGCGCTGGCCGACACCGCGGCGCTGGCCACCCTGTTGCTGCCGATGATGCGTCAGCGCGGCTACCCGCTGC ATTCCTCGGCCGGCCTGGTGGCCGCTGGCGGCATCATCGCGCCGATCATCCCACCGTCGATGCCCTTCGTGATCTATGGC GTGGTCACCAATACCTCGATCAGCCAGCTGTTCATGGCCGGTCTGGTGCCGGGGCTGATCATGGGCGCCGGACTGATCGT CGCCTGGACCCTGATCGCCCGCGGCTTCACCGAGCCGACGCCGCCCAAGGCCAGCGCCGCCGAGCGTCGCCGGGTACTGG TCGATGGCGTGGCGGCGCTGATGCTGCCGGTGATCATCGTCGGCGGCCTGCGCTTCGGCATCTTCACCCCGACCGAGGCG GCCGTGGTCGCCGCGGTCTATGCCCTGGCGGTGTCGACCCTGTTGTACCGCGAGCTGAGCTGGACGGACCTGATCGAGAC CCTGACCCGCGCCAGCCGCACCACCGCCTCGGTGATGTTCCTCTGCGCCGCGGCAACGGTGTCGGCCTACATGATCACCC TGGCCCAGCTGCCGGACGAGATCGGAGCCATGCTCGGGCCGCTGGCCGAGCACCCGCGCCTGCTGGTGCTGGCGATCATG CTGCTGATGATCGCGGTGGGTATGGTGCTGGACCTGACGCCGACCATCCTGATCCTCGCCCCGGTGCTGGCGCCGATCGC CATCAAGGCCGGGGTCGACCCGGTGTACTTCGGCGTGATGTTCGTGCTGATCGGCTCCATCGGCCTGATCACGCCGCCTG TGGGCACCGTGCTCAACGTGGTCGGCGGTATCGGCAAGCTGCGCATGGAGGTACTGGTGCGCGGGGTGATGCCGTTCTTC CTGATCTACCTAGGCATCGTCGTCCTGCTGATCGCGTTTCCGTCCATCGTTACCGTGCCACTGGCCTGGTTGCGCTGA Protein sequence : MTVAVFLTSLLGFMAFGMPIAFALILTAAVLMWYLGFWDVQLLAQNLLAGADSFPLLAVPFFILAGELMNAGGISRRIIA MAQAYFGHLRGGLGYVAIAAAVLLASMSGSALADTAALATLLLPMMRQRGYPLHSSAGLVAAGGIIAPIIPPSMPFVIYG VVTNTSISQLFMAGLVPGLIMGAGLIVAWTLIARGFTEPTPPKASAAERRRVLVDGVAALMLPVIIVGGLRFGIFTPTEA AVVAAVYALAVSTLLYRELSWTDLIETLTRASRTTASVMFLCAAATVSAYMITLAQLPDEIGAMLGPLAEHPRLLVLAIM LLMIAVGMVLDLTPTILILAPVLAPIAIKAGVDPVYFGVMFVLIGSIGLITPPVGTVLNVVGGIGKLRMEVLVRGVMPFF LIYLGIVVLLIAFPSIVTVPLAWLR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| VC0395_A1375 | YP_001217318.1 | hypothetical protein | Not tested | VPI-2 | Protein | 9e-39 | 42 |
| VPI2_0025c | ACA01842.1 | TRAP dicarboxylate transporter DctM subunit | Not tested | VPI-2 | Protein | 6e-39 | 42 |
| VC1777 | NP_231412.1 | hypothetical protein | Not tested | VPI-2 | Protein | 9e-39 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Pmen_2568 | YP_001188056.1 | TRAP dicarboxylate transporter subunit DctM | VFG1110 | Protein | 4e-39 | 42 |
