Gene Information

Name : Pmen_2559 (Pmen_2559)
Accession : YP_001188047.1
Strain : Pseudomonas mendocina ymp
Genome accession: NC_009439
Putative virulence/resistance : Resistance
Product : ABC transporter-like protein
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4181
EC number : -
Position : 2820510 - 2821193 bp
Length : 684 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: AAA ATPase

DNA sequence : 
ATGACTTCGAGCATTCTCGCTGCGCGGAACCTTAGCAAAGTGGTCACCAGCGCGGAAGGCGAGCTGACCATTCTTCACGA
CCTCGACCTCAGCCTGGAGAAAGGCGACAGCCTGGCGATAGTCGGCAGCTCCGGTTCGGGCAAATCCACCCTGCTCGGCC
TGCTCGCCGGCCTGGACCTGCCCAGCGCCGGAAAGGTGCTGCTGGCTGGCAAGGACATCGGCGAGCTGGATGAGGACCAG
CGCGCACGCCTGCGCGCCGAGCATGTCGGCTTCGTCTTCCAGTCCTTCCAGTTGCTCGACAGCCTCAATGCGCTGGAAAA
CGTCATGCTGCCGCTGGAACTGGAGGGCCGTGCCGACGCCCGCCAGCGTGCCCGTGCTTTGCTCGAGCGGGTTGGCCTGG
GGCAGCGCCTGACCCACTACCCACGTCAGCTCTCCGGTGGTGAGCAGCAGCGCGTCGCTATCGCCCGCGCCTTCGCCGCC
GAGCCGGACGTACTGTTCGCCGACGAGCCCACGGGCAACCTCGACAGTCACACTGGCGAGCGCATCAGCGACCTGCTGTT
CGAACTCAATCAGGAGCGCGGCACCACCCTGGTTCTGGTCACCCATGACGAACGCCTGGCGCATCGCTGCCAGCGCCTGA
TCCGTCTGGAAGGCGGCCATCTGATCGATCGCGTGGAGCCCTGA

Protein sequence : 
MTSSILAARNLSKVVTSAEGELTILHDLDLSLEKGDSLAIVGSSGSGKSTLLGLLAGLDLPSAGKVLLAGKDIGELDEDQ
RARLRAEHVGFVFQSFQLLDSLNALENVMLPLELEGRADARQRARALLERVGLGQRLTHYPRQLSGGEQQRVAIARAFAA
EPDVLFADEPTGNLDSHTGERISDLLFELNQERGTTLVLVTHDERLAHRCQRLIRLEGGHLIDRVEP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 6e-21 44
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-21 41
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-21 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-21 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pmen_2559 YP_001188047.1 ABC transporter-like protein NC_008702.1.4606598. Protein 3e-27 47
Pmen_2559 YP_001188047.1 ABC transporter-like protein NC_012469.1.7686878. Protein 1e-27 42