|
Name : Pmen_2068 (Pmen_2068) Accession : YP_001187561.1 Strain : Pseudomonas mendocina ymp Genome accession: NC_009439 Putative virulence/resistance : Virulence Product : lysine decarboxylase Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG1982 EC number : 4.1.1.18 Position : 2289642 - 2291885 bp Length : 2244 bp Strand : + Note : PFAM: Orn/Lys/Arg decarboxylase, major region; Orn/Lys/Arg decarboxylase domain protein DNA sequence : ATGTATAAAGATCTAAAATTCCCCGTCCTCATCGTTCACCGCGACATCAAGGCCGACACGGTGGCCGGCGATCGCGTGCG CGCCATCGCGCGCGAGCTGGAACAGGACGGTTTCAGCATTCTCCCCACCGCCAGTGCAGCCGAGGGCCGCATCGTCGCCT CCACCCACCACGGTCTGGCCTGCATCCTGGTGGCCGCCGAGGGCGCGGGCGAGAACAGTCGTCTGCTGCAGGACATGGTC GAGCTGATCCGCGTGGCGCGGGTGCGTGCTCCGCAATTGCCGATCTTCGCCCTCGGCGAGCAGGTCACCATCGAGAATGC GCCGGCCGAGGCCATGGCCGATCTCAATCACCTGCGCGGCATCCTCTACCTCTACGAAGACACCGTTTCCTTCCTGGCCC GTCAGGTGGCGCGGGCGGCGCACAACTACCTCGACGGCCTGCTGCCGCCGTTCTTCAAGGCGCTGGTGCAGCACACCGCA CAATCCAACTATTCTTGGCACACGCCCGGTCACGGCGGCGGCGTGGCTTACCGCAAGAGTCCGGTAGGCCAGGCGTTTCA CCAGTTCTTCGGGGAAAACACCCTGCGTTCGGATCTGTCGGTGTCGGTGCCGGAGCTGGGGTCGCTGCTCGATCACACAG GTCCGCTCGCCGAAGCCGAGGCGCGCGCCGCGCGCAACTTCGGCGCCGACCACACCTTCTTCGTGATCAACGGCACGTCC ACGGCGAACAAGATCGTCTGGCATTCGATGGTCGGGCGTGACGATCTGGTACTGGTGGACCGCAACTGCCACAAGTCGAT CCTGCATTCGATCATCATGACCGGCGCGATCCCGCTGTACCTGTGCCCCGAGCGCAACGAGCTGGGCATCATCGGGCCGA TTCCGCTGTCGGAGTTCAGCCGTGAATCGATCCAGGCCAAGATCGACGCCAGCCCGCTGGCACGTGGTCGCGCGCCCAAG GTCAAGCTGGCGGTGGTGACCAACTCCACCTACGACGGGCTTTGCTACAACGCCGAGATGGTCAAGCAGGCGCTGGGCGA TTCGGTCGAGGTGCTGCACTTCGACGAGGCCTGGTACGCCTACGCCGCGTTCCATGAGTTCTATGCCGGCCGCTACGGCA TGGGCACCCAGTGCGACGAGCGCTCGCCGCTGGTGTTCACCACCCATTCCACGCACAAGCTGCTGGCCGCGTTCAGCCAG GCCTCGATGATCCATGTGCAGGATGGCGGGCAGCGCCAATTGGACCGTGACCGCTTCAACGAAGCCTTCATGATGCACAT CTCCACGTCGCCGCAGTACGGCATCATCGCCTCGCTGGATGTGGCCTCGGCGATGATGGAAGGCCCGGCCGGGCGTTCGC TGATCCAGGAAACCTTCGACGAGGCCCTGAGCTTCCGTCGTGCCCTGGCCAACGTGCGCCGCAACCTCGATGCCGAGGAC TGGTGGTTCAGCATCTGGCAGCCGGGCGAGGCCGACGGCGCCGACAGCCTGTCGACTGCCGACTGGGTGCTGCAGCCGGA CGCCGACTGGCACGGTTTCGGCGAGGTAGCCAATGACTATGTGCTGCTTGACCCGATCAAGGTGACGCTGGTGATGCCCG GTCTCAACGCGGCCGGCAAGCTGCAGGAGCGTGGGATCCCGGCGGCGGTGGTCAGCAAGTTCCTCTGGGAGCGCGGCCTG GTCGTGGAAAAGACCGGTCTGTATTCCTTCCTGGTGCTGTTTTCCATGGGCATCACCAAGGGCAAGTGGAGCACGCTGCT GACCGAACTGCTGGAATTCAAGCGCAGCTACGACGCCAATCTGCCGCTGGTGGACGTGCTGCCCTCCATCGCTCATGCGG GTGGCGGCTGCTATCAGGGCATGGGGCTGCGCGATCTGTGTGATGCGCTGCATGGCTGCTACCGCGACAACGCCACGGCC AAGGCGTTGAAGAGCATGTACACGGCTTTGCCGGAAGTGGCGATCAAGCCGGCCGAGGCTTACGACCGCCTGGTGCGCGG CGAGGTCGAGGCGGTGCCGATCGATCAGCTGCAGGGGCGCATCGCTGCCGTGATGCTGGTGCCTTATCCGCCGGGCATTC CGCTGATCATGCCGGGTGAGCGCTTCACCGCCGCGACCCGCTCGATACTCGATTACCTGGCCTTCGCGCGGACCTTCGAT CAGGCCTTCCCGGGCTTCGACATCGACGTGCACGGCCTGCAGACCGAGGCGGGGCAGTATTGCGTCGATTGTCTCGTGGA GTGA Protein sequence : MYKDLKFPVLIVHRDIKADTVAGDRVRAIARELEQDGFSILPTASAAEGRIVASTHHGLACILVAAEGAGENSRLLQDMV ELIRVARVRAPQLPIFALGEQVTIENAPAEAMADLNHLRGILYLYEDTVSFLARQVARAAHNYLDGLLPPFFKALVQHTA QSNYSWHTPGHGGGVAYRKSPVGQAFHQFFGENTLRSDLSVSVPELGSLLDHTGPLAEAEARAARNFGADHTFFVINGTS TANKIVWHSMVGRDDLVLVDRNCHKSILHSIIMTGAIPLYLCPERNELGIIGPIPLSEFSRESIQAKIDASPLARGRAPK VKLAVVTNSTYDGLCYNAEMVKQALGDSVEVLHFDEAWYAYAAFHEFYAGRYGMGTQCDERSPLVFTTHSTHKLLAAFSQ ASMIHVQDGGQRQLDRDRFNEAFMMHISTSPQYGIIASLDVASAMMEGPAGRSLIQETFDEALSFRRALANVRRNLDAED WWFSIWQPGEADGADSLSTADWVLQPDADWHGFGEVANDYVLLDPIKVTLVMPGLNAAGKLQERGIPAAVVSKFLWERGL VVEKTGLYSFLVLFSMGITKGKWSTLLTELLEFKRSYDANLPLVDVLPSIAHAGGGCYQGMGLRDLCDALHGCYRDNATA KALKSMYTALPEVAIKPAEAYDRLVRGEVEAVPIDQLQGRIAAVMLVPYPPGIPLIMPGERFTAATRSILDYLAFARTFD QAFPGFDIDVHGLQTEAGQYCVDCLVE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66195.1 | putative cadaverin decarboxylase | Virulence | PAI III 536 | Protein | 1e-131 | 44 |
| cadA | NP_756988.1 | lysine decarboxylase, inducible | Not tested | PAI II CFT073 | Protein | 8e-128 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Pmen_2068 | YP_001187561.1 | lysine decarboxylase | VFG1670 | Protein | 7e-132 | 44 |
