Gene Information

Name : Pmen_1988 (Pmen_1988)
Accession : YP_001187481.1
Strain : Pseudomonas mendocina ymp
Genome accession: NC_009439
Putative virulence/resistance : Unknown
Product : transposase IS66
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3436
EC number : -
Position : 2198715 - 2200277 bp
Length : 1563 bp
Strand : -
Note : PFAM: transposase IS66

DNA sequence :
ATGATCGCCGTGCCCGCCCCCCTTCCTGACGACCCAATCCTGCTCAAGCATTTACTGCTGCTGGCCAGTGAACAGGCGGC
TGCGAAAGATGCTCGCATAGAACAACTTCAGGAACAGGTCGCCCTGCTGCGCCACAAGTTGTTCTCGCCCAAGTCCGAGC
GCAGCCCTGAAGACGCCGACTCACCGCAGTTGGCCATGTTCAACGAGGTCGAAGAGCTGATCGAAGCGGCCGCTGCGCCA
AGCGAAGCCGAAGCCGAAGCCGAAGCCGAAGCCGAAGAAATCGTTGCGCCGGTCAAGCGCCGTGGCAAGCGCAAGCCGTT
GCCGGCCAACCTGCCGCGTGTCGAAGTCATCCACGACCTGCCCGAGCACGAGCTGACTTGCGCCTGTGGCGCCTGCAAAC
AAGTCATCGGCGAGGAGACCAGCGAACAGCTGGAGATTATCCCGATGCAGGTGCGGGTCATCCGCCATATCCGCAAGACC
TACGCCTGCAAGGCCTGCGAAGCGGCGCCGCTCACTGCCGACAAGCCGGCCCAACTGATCGAGAAGAGCCTGGCCAGCCC
CAGCGTGTTGGCCATGCTGCTGACCACCAAGTACGCCGACGGCATCCCGCTGTACCGCTTCGAGAAGATGCTCAGCCGCC
ACGGCGTCGACATACCACGCCAGACCCTGGCGCGCTGGGTGATCCAGAGCGGTGAACAGCTGCAACCGCTGCTCAACCTG
CTGCGCGACAAGCTGCTCGAATACCCCGTTTTGCACTGCGACGAAACGCGCCTGCAGGTGCTGCATGAACCGGGACGCGA
TCCCACCGCGCAGTCCTGGATGTGGGTACAAAGCGGTGGACCACCGGATAAGCCGGTGATCCTCTTCGACTACACCGCCA
GCCGCGCGCAGGAGGTGCCGCTGCGCTTGCTCGACGGCTATCGCGGCTACCTGATGACCGACGACTACGCCGGCTACAAC
GCCGTGGCCGCGCAAGAAGGCATCGAACGCCTCGGCTGCTGGGCGCATGCGCGGCGCAAGTTCGTCGAGGCGCAGAAAGT
GCAACCCAAGGGCAAAACCGGCCGTGCCGACATGGCGCTGAACCTGATCAACAAGCTCTACGGCATCGAGCGTGACCTGA
AGGACGCCTGCGATACCGAGCGCCTGGTCGCCCGTCAGCAACGCAGCCAGCCGCTGCTCGATCAACTCAAGACCTGGCTG
GACAAGACCCAGCCGCAGGTCGTCGGGCAGACGGCGCTGGGCAGGGCGGTGAACTACCTGGCCAGCAACTGGAGAAAGCT
GGTGCGCTACGTCGAAGGTGGACATCTGCCGATCGACAACAACCGCGCGGAGAACGCCATCCGCCCGTTCGTTATCGGGC
GCAAGAACTGGCTGTTCAGCGACACGCCCAAGGGGGCCACGGCCAGCGCACAGATCTACAGCCTGATCGAAACCGCCAAG
GCCAATGGCCAGGAGCCTTACGCCTGGCTGCGCCACATCCTCGAACGCCTGCCGGCCGCCAATAGCGTCGAGGATTACGA
AGCGCTGCTGCCGTGGAATTGCTCGCCAGTGAGCGCATCCTGA

Protein sequence :
MIAVPAPLPDDPILLKHLLLLASEQAAAKDARIEQLQEQVALLRHKLFSPKSERSPEDADSPQLAMFNEVEELIEAAAAP
SEAEAEAEAEAEEIVAPVKRRGKRKPLPANLPRVEVIHDLPEHELTCACGACKQVIGEETSEQLEIIPMQVRVIRHIRKT
YACKACEAAPLTADKPAQLIEKSLASPSVLAMLLTTKYADGIPLYRFEKMLSRHGVDIPRQTLARWVIQSGEQLQPLLNL
LRDKLLEYPVLHCDETRLQVLHEPGRDPTAQSWMWVQSGGPPDKPVILFDYTASRAQEVPLRLLDGYRGYLMTDDYAGYN
AVAAQEGIERLGCWAHARRKFVEAQKVQPKGKTGRADMALNLINKLYGIERDLKDACDTERLVARQQRSQPLLDQLKTWL
DKTQPQVVGQTALGRAVNYLASNWRKLVRYVEGGHLPIDNNRAENAIRPFVIGRKNWLFSDTPKGATASAQIYSLIETAK
ANGQEPYAWLRHILERLPAANSVEDYEALLPWNCSPVSAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAF71494.1 unknown Not tested Hrp PAI Protein 2e-170 71