Gene Information

Name : Pmen_1964 (Pmen_1964)
Accession : YP_001187457.1
Strain : Pseudomonas mendocina ymp
Genome accession: NC_009439
Putative virulence/resistance : Virulence
Product : aldehyde dehydrogenase
Function : -
COG functional category : C : Energy production and conversion
COG ID : COG1012
EC number : -
Position : 2161982 - 2163502 bp
Length : 1521 bp
Strand : +
Note : PFAM: aldehyde dehydrogenase

DNA sequence : 
ATGATTTACGCGAAACCGGGTACTCCAGGCGCCGTCGTCACCCTCAAGCCGCGCTATGGCAACTACATCAATGGCGAATT
CGTCGCTCCGCTCAGTGGCCAGTACTTCAGCAACACCAGCCCGGTCGACGCTTCGGTGATCGCCGAATTCCCCCGTTCCA
ACGCTGCCGATATCGACAAGGCGCTGGATGCCGCGCATGCCGCCGCCGATGCCTGGGGCCGCACCAGCGTGCAGGAGCGC
TCGCACATCCTGCTGAAGATCGCCGATCGCATCGAAGCCAACCTCGAGCTGCTGGCCGTGGCCGAAACCTGGGACAACGG
CAAGGCCGTGCGCGAGACCCTCAACGCCGACGTGCCGCTGGCCGCCGACCATTTCCGCTACTTCGCCGGCTGCATCCGCG
CCCAGGAAGGCAGCACCGCCGAGATCAACGACGGCACCGTGGCCTATCACTTCCACGAGCCGCTGGGCGTGGTCGGGCAG
ATCATCCCGTGGAACTTCCCGCTGCTGATGGCTGCCTGGAAACTCGCCCCGGCCCTGGCTGCCGGTAACTGCATCGTGCT
CAAGCCCGCCGAGCAGACCCCGCTGTCGATCACCCTGCTGGTGGAAATCATCGGCGACCTGCTGCCGCCGGGCGTACTCA
ACATTGTCCAGGGCTTCGGCCGTGAGGCCGGTGAAGCGCTGGCCACCAGCAAGCGCATCGCCAAGATCGCCTTCACCGGT
TCCACCCCGGTGGGCTCGCACATCCTCAAGTGCGCCGCCGAGAACATCATCCCATCCACCGTCGAGCTGGGCGGCAAGTC
GCCGAACATCTTCTTCGCCGACATCATGAACGCCGAGCCGGCCTTCATCGAGAAGGCTGCCGAAGGTCTGGTGCTGGGCT
TCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCGCGCGCACTGGTGCAGGAGTCGATCTACGACGCCTTCATGGCCGAG
GTGATGAAGAAGGTCAAGCAGATCAAGCGCGGCAACCCGCTGGACACCGAGACCATGGTCGGCGCCCAGGCCTCGCAGCA
GCAGTTCGACAAGATCCTCAGCTATCTCGAGATCGCCCAGCAGGAAGGCGCTCAGGTGCTCACCGGTGGCGCCGCCGAGC
GTCTGGACGGTGACCTGGCCAGCGGTTACTACATCCAGCCGACCCTGCTCAAGGGCACCAACCAGATGCGCGTGTTCCAG
GAAGAGATCTTCGGCCCGGTGATTGGTGTGACCACCTTCAAGGACGAGGCCGAGGCCCTGGCCATTGCCAACGACACCGA
GTTCGGCCTGGGTGCCGGCGTGTGGAGCCGCGACATCAATGTCGCCTACCGCATGGGCCGTGCGATCAAGGCCGGTCGCG
TCTGGACCAACTGCTACCACCTGTACCCGGCGCATGCCGCGTTCGGTGGTTACAAGAAGTCCGGTGTCGGCCGTGAAACC
CACAAGATGATGCTCGACCACTACCAGCAGACCAAGAACCTGCTGGTGAGCTACGACATCAATCCGCTGGGCTTCTTCTG
A

Protein sequence : 
MIYAKPGTPGAVVTLKPRYGNYINGEFVAPLSGQYFSNTSPVDASVIAEFPRSNAADIDKALDAAHAAADAWGRTSVQER
SHILLKIADRIEANLELLAVAETWDNGKAVRETLNADVPLAADHFRYFAGCIRAQEGSTAEINDGTVAYHFHEPLGVVGQ
IIPWNFPLLMAAWKLAPALAAGNCIVLKPAEQTPLSITLLVEIIGDLLPPGVLNIVQGFGREAGEALATSKRIAKIAFTG
STPVGSHILKCAAENIIPSTVELGGKSPNIFFADIMNAEPAFIEKAAEGLVLGFFNQGEVCTCPSRALVQESIYDAFMAE
VMKKVKQIKRGNPLDTETMVGAQASQQQFDKILSYLEIAQQEGAQVLTGGAAERLDGDLASGYYIQPTLLKGTNQMRVFQ
EEIFGPVIGVTTFKDEAEALAIANDTEFGLGAGVWSRDINVAYRMGRAIKAGRVWTNCYHLYPAHAAFGGYKKSGVGRET
HKMMLDHYQQTKNLLVSYDINPLGFF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0819 NP_230467.2 aldehyde dehydrogenase Not tested VPI-1 Protein 2e-150 66
aldA AAC12273.1 aldehyde dehydrogenase Virulence VPI Protein 9e-157 65
aldA AAK20747.1 aldehyde dehydrogenase Virulence VPI Protein 9e-157 65
aldA AAK20776.1 aldehyde dehydrogenase Virulence VPI Protein 9e-157 65
aldA-1 YP_001216300.1 aldehyde dehydrogenase Not tested VPI-1 Protein 1e-155 65

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pmen_1964 YP_001187457.1 aldehyde dehydrogenase VFG0082 Protein 1e-150 66