Gene Information

Name : Pmen_1608 (Pmen_1608)
Accession : YP_001187104.1
Strain : Pseudomonas mendocina ymp
Genome accession: NC_009439
Putative virulence/resistance : Resistance
Product : lipoprotein releasing system, ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1772261 - 1772974 bp
Length : 714 bp
Strand : +
Note : TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase

DNA sequence : 
ATGAGTGAGTCCATGAACCCGAACGCCATGAAACAGCACAATGCCGTGCTCAGCTGCCGCAACCTGAGCAAGCGTTACGA
CGAAGGCCCCGAGTCGGTGGTGGTGCTCGACGGGCTCGAACTGGAACTGCTGCCCGGTGAGCGCGTGGCCATCGTCGGCA
GCTCCGGCTCCGGCAAGAGCACCCTGCTGAACATGCTCGGCGGCCTGGATACGCCCAGTGCAGGCAGCGTGTGGCTGGCC
GGCGAGCAACTGTCGGCGCTGAGCGAAACCGCCCGTGGCCTGTTGCGCAACCGTGCACTGGGCTTCGTTTATCAGTTTCA
TCATCTGCTGGCCGAATTTACCGCGCTGGAAAATGCCTGCATGCCGCTGCTGATCGGCAAGACGCCGATTGCCGAAGCGC
GCCAGCGTGCGACCGCTCTGCTGGAGCGAGTCGGCCTGGGCCATCGCCTGCACCACAAACCGGCTGAACTGTCCGGTGGT
GAGCGTCAGCGCGTAGCCATTGCCCGTGCCCTGGTCAACCGCCCCGGGCTGGTGCTGCTCGATGAGCCCACCGGCAACCT
CGATCAGCACACTGCCGAAGGCATTCAGGAGCTGATGCGCGAACTGAGCCGCGACTCCAATACCGCATTTCTGGTGGTGA
CTCACGACATGCAGCTGGCGCGCCAGATGGATCGCGTGCTCAGCCTGCAGGACGGCAAGCTGGTGGCCCTCTAA

Protein sequence : 
MSESMNPNAMKQHNAVLSCRNLSKRYDEGPESVVVLDGLELELLPGERVAIVGSSGSGKSTLLNMLGGLDTPSAGSVWLA
GEQLSALSETARGLLRNRALGFVYQFHHLLAEFTALENACMPLLIGKTPIAEARQRATALLERVGLGHRLHHKPAELSGG
ERQRVAIARALVNRPGLVLLDEPTGNLDQHTAEGIQELMRELSRDSNTAFLVVTHDMQLARQMDRVLSLQDGKLVAL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-20 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-22 41
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-22 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 5e-22 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pmen_1608 YP_001187104.1 lipoprotein releasing system, ATP-binding protein NC_008702.1.4606598. Protein 4e-29 46
Pmen_1608 YP_001187104.1 lipoprotein releasing system, ATP-binding protein NC_012469.1.7686878. Protein 9e-34 45