Gene Information

Name : Pmen_1459 (Pmen_1459)
Accession : YP_001186956.1
Strain : Pseudomonas mendocina ymp
Genome accession: NC_009439
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1621432 - 1622103 bp
Length : 672 bp
Strand : +
Note : PFAM: response regulator receiver; transcriptional regulator domain protein

DNA sequence : 
GTGCGGATTCTGCTGGTCGAAGACCACCCGCAATTGGCGGAAAGCGTGGCCCAGGCGCTGAAAGGCGCCGGCTGGACGGT
GGACGTGCTGCATGACGGAGTGGCCGCCGACCTGGCGCTGTCCAGCGAGGACTACGCCCTGGCGATTCTCGATATCGGAT
TGCCCAGGCTGGACGGCTTCGCCGTGCTGGCGCGCCTGCGCGACCGCGGCCAGCGCCTGCCGGTGCTGATGCTGACCGCC
CGTGGCGAGGTCAAGGACCGCGTGCATGGCCTCAACCTCGGCGCCGATGACTACCTGGCCAAGCCCTTTGAACTCTCCGA
ACTGGAGGCGCGGGTCAAGGCGCTGCTGCGTCGCAGCGTGCTCGGCGGCGAGCAGCTGCAGCGCTGCGGCGATCTGGTCT
ACGACCTCGGCGCGCGTCGCTTCAGCATGAAGGGCGAGGCCCTGAGCCTGACCGCCCGCGAGCAGGCGGTGCTGGAGGCG
ATGATCGCGCGGCCCGGACGGGTGATGAGCAAGGAGCAGTTGGCGGCCCAGGTGTTCGGCCTGGATGAGGACGCCAGCCC
CGATGCCATCGAGATCTATATCCATCGTCTGCGCAAGAAACTCGAGGGCAGCGGCGTGCGCATCGTTACCTTCCGCGGCC
TGGGCTATCTGCTGGAGGCGATCGAGGCATGA

Protein sequence : 
MRILLVEDHPQLAESVAQALKGAGWTVDVLHDGVAADLALSSEDYALAILDIGLPRLDGFAVLARLRDRGQRLPVLMLTA
RGEVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSVLGGEQLQRCGDLVYDLGARRFSMKGEALSLTAREQAVLEA
MIARPGRVMSKEQLAAQVFGLDEDASPDAIEIYIHRLRKKLEGSGVRIVTFRGLGYLLEAIEA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 4e-28 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-27 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pmen_1459 YP_001186956.1 two component transcriptional regulator BAC0083 Protein 1e-35 48
Pmen_1459 YP_001186956.1 two component transcriptional regulator BAC0638 Protein 4e-32 44
Pmen_1459 YP_001186956.1 two component transcriptional regulator BAC0197 Protein 8e-35 42
Pmen_1459 YP_001186956.1 two component transcriptional regulator BAC0347 Protein 1e-30 41
Pmen_1459 YP_001186956.1 two component transcriptional regulator BAC0487 Protein 1e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pmen_1459 YP_001186956.1 two component transcriptional regulator VFG1390 Protein 8e-31 44
Pmen_1459 YP_001186956.1 two component transcriptional regulator VFG1389 Protein 2e-25 43
Pmen_1459 YP_001186956.1 two component transcriptional regulator VFG0596 Protein 1e-28 42
Pmen_1459 YP_001186956.1 two component transcriptional regulator VFG0473 Protein 1e-36 41