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Name : Pmen_1188 (Pmen_1188) Accession : YP_001186685.1 Strain : Pseudomonas mendocina ymp Genome accession: NC_009439 Putative virulence/resistance : Unknown Product : phage integrase family protein Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0582 EC number : - Position : 1339379 - 1340638 bp Length : 1260 bp Strand : - Note : PFAM: phage integrase family protein DNA sequence : ATGGGTGCCGCAACAACGCGCCTTTCAGACCTGAAGGTCAAAGCAGCAAAGCCCAAAGAAAAGGACTACACCTTGACTGA CGGCAACGGCCTTCAGATGCGAGTGAGAATCAATGGATCGAGATTGTGGAATTTCAACTACATCCACCCCATCACCAAGA AGCGACTGAATATGGGGCTTGGCACCTTCCCGGAAGTAAGCCTTGCTCAAGCCCGCAAACTGACCATTGAAGCGCGTGAG CTCGTAGCACAGGGCATTGATCCCAAAGAGAGACGCGACGCAGATCGACAGGCCAAAAAGGCCGCAACCGAGCACACGCT GCAGAACGTAGCGACGTCCTGGTATGAACTCAAGAAAGATGCAGTAACCCCCGCCTACGCTGAAGACATTTGGCGCTCGC TTACGTTGCACGTCTTCCCCGACTTGGGCGTTACGCCGATCGCATCCATAACAGCTCCGAAAGTCATCAGCCTTCTCAAG CCGCTCGAAACTAAAGGCAGCCTGGAAACCGTCAAACGCCTTACGCAGCGACTCAACGAAATCATGACCTACGGGGTCAA CTCAGGCCTGATACCCGCCAACCCACTTACCGGGATTGGTAGCGTGTTCAAGAAGCCGAAGAAAAAGAACATGCCGGCCT TACATCCCGATGAGCTCAAAGAGCTCATGGTTGCAATCGCGAACGCCAGCATAAAAAGAACCACTCGATGCCTGATCGAG TGGCAACTGCACACGATGACTCGCCCCGTTGAGGCTGCCACTACCCGCTGGGCCGATATCGACTTCGAGAAAAGGATCTG GACGATCCCGGCTGAACGCATGAAGAAACGTCGCCCGCATACGGTGCCGCTTACAGATCAAGCATTGGCCATTCTGGAAG CAATCAAACCCTACAGCGGGCACCGTGAATACGTGTTCCCTGCTGACCGCAATCCGCGTACTCACTGCAATAGCCAAACA GCCAACATGGCCTTGAAACGCATGGGCTTTGAGGGACGCTTGGTAAGCCACGGAATGCGATCAATGGCCAGTACAACGCT CAACGAGCACGGCTGGGAGCCTGAGCTGATCGAAGTAGCGCTGGCGCATGTGGATAAGGACGAAGTGCGCAGTGCCTACA ACCGTGCGGACTATATCGATCGCAGGCGCCCTATGATGGCTTGGTGGAGTGAGCATATTCAAAAGGCTGCTACCGGCAAT CTTTCGGCTGCAGCTATCAATCAACTTGGTGATCGAAAAATCATTCCAATACGCCGCTAA Protein sequence : MGAATTRLSDLKVKAAKPKEKDYTLTDGNGLQMRVRINGSRLWNFNYIHPITKKRLNMGLGTFPEVSLAQARKLTIEARE LVAQGIDPKERRDADRQAKKAATEHTLQNVATSWYELKKDAVTPAYAEDIWRSLTLHVFPDLGVTPIASITAPKVISLLK PLETKGSLETVKRLTQRLNEIMTYGVNSGLIPANPLTGIGSVFKKPKKKNMPALHPDELKELMVAIANASIKRTTRCLIE WQLHTMTRPVEAATTRWADIDFEKRIWTIPAERMKKRRPHTVPLTDQALAILEAIKPYSGHREYVFPADRNPRTHCNSQT ANMALKRMGFEGRLVSHGMRSMASTTLNEHGWEPELIEVALAHVDKDEVRSAYNRADYIDRRRPMMAWWSEHIQKAATGN LSAAAINQLGDRKIIPIRR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| VC0395_A0372 | YP_001216328.1 | phage family integrase | Not tested | VPI-1 | Protein | 1e-135 | 62 |
| int | AAK20773.1 | integrase | Not tested | VPI | Protein | 9e-136 | 62 |
| int | AAK20803.1 | integrase | Not tested | VPI | Protein | 9e-136 | 62 |
| unnamed | AAA82714.1 | integrase | Not tested | VPI | Protein | 9e-136 | 62 |
| VC0847 | NP_230494.1 | phage family integrase | Not tested | VPI-1 | Protein | 1e-135 | 62 |
| VC0516 | NP_230167.1 | phage integrase | Not tested | VSP-2 | Protein | 8e-113 | 53 |
| VPI2_0001 | ACA01818.1 | phage family integrase | Not tested | VPI-2 | Protein | 4e-100 | 50 |
| VC1758 | NP_231394.1 | phage family integrase | Not tested | VPI-2 | Protein | 6e-100 | 50 |
| VC0395_A1357 | YP_001217300.1 | phage family integrase | Not tested | VPI-2 | Protein | 6e-100 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Pmen_1188 | YP_001186685.1 | phage integrase family protein | VFG1092 | Protein | 2e-100 | 50 |
