Gene Information

Name : Pmen_1164 (Pmen_1164)
Accession : YP_001186662.1
Strain : Pseudomonas mendocina ymp
Genome accession: NC_009439
Putative virulence/resistance : Unknown
Product : IS66 Orf2 family protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3436
EC number : -
Position : 1311427 - 1311786 bp
Length : 360 bp
Strand : -
Note : PFAM: IS66 Orf2 family protein

DNA sequence :
ATGATGCGTCCCGACGCCAAGGTGCAGAAGGTCTACCTCTACCCAAAACCCGTCGATTTCCGCAAATCCATCAACGGCCT
GGCCGCTCTGGTCGAGCTGGACATCAAGGTGGAAGTGTTCAACCCCGTGCTGTTCGTGTTCCTCAACCGCACCCGCAGTC
AGGTCAAGATCCTCTACTGGGAGCGCAATGGCTTCTGCCTGTGGCTCAAGCGTTTGGAAGCCGAACGCTTCAAGACCAAG
CCCGATGCCGGCGACGAGGCCATCGAGCTGACGGTCGATGAGTTGAACTGGCTGCTCGACGGCATCGACCTGTGGCGCAA
CCGTCCGCACCAGATACTGACGCCGCGTTTCGTGACCTGA

Protein sequence :
MMRPDAKVQKVYLYPKPVDFRKSINGLAALVELDIKVEVFNPVLFVFLNRTRSQVKILYWERNGFCLWLKRLEAERFKTK
PDAGDEAIELTVDELNWLLDGIDLWRNRPHQILTPRFVT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAF71493.1 unknown Not tested Hrp PAI Protein 2e-45 84
unnamed AAL08461.1 unknown Not tested SRL Protein 3e-10 42
Z1132 NP_286667.1 hypothetical protein Not tested TAI Protein 2e-09 42
Z1571 NP_287075.1 hypothetical protein Not tested TAI Protein 2e-09 42
ECs4546 NP_312573.1 hypothetical protein Not tested LEE Protein 6e-10 41
unnamed AAC31493.1 L0014 Not tested LEE Protein 4e-10 41
hp4 AAC61716.1 Hp4 Not tested PAI I CFT073 Protein 4e-10 41
unnamed AAL99258.1 unknown Not tested LEE Protein 4e-10 41
c3561 NP_755436.1 hypothetical protein Not tested PAI I CFT073 Protein 7e-10 41
unnamed ACU09438.1 IS66 family element orf2 Not tested LEE Protein 4e-10 41
ECUMN_3327 YP_002414007.1 putative transposase ORF2, IS66 family Not tested Not named Protein 7e-10 41
c3578 NP_755453.1 hypothetical protein Not tested PAI I CFT073 Protein 6e-10 41
Z4336 NP_289561.1 hypothetical protein Not tested OI-122 Protein 6e-10 41
Z5097 NP_290248.1 prophage-associated protein Not tested LEE Protein 6e-10 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pmen_1164 YP_001186662.1 IS66 Orf2 family protein VFG1052 Protein 1e-10 42
Pmen_1164 YP_001186662.1 IS66 Orf2 family protein VFG1709 Protein 2e-10 41
Pmen_1164 YP_001186662.1 IS66 Orf2 family protein VFG0792 Protein 2e-10 41
Pmen_1164 YP_001186662.1 IS66 Orf2 family protein VFG1698 Protein 2e-10 41