Gene Information

Name : rph (Sputcn32_0456)
Accession : YP_001181987.1
Strain : Shewanella putrefaciens CN-32
Genome accession: NC_009438
Putative virulence/resistance : Unknown
Product : ribonuclease PH
Function : -
COG functional category : J : Translation, ribosomal structure and biogenesis
COG ID : COG0689
EC number : 2.7.7.56
Position : 491350 - 492063 bp
Length : 714 bp
Strand : +
Note : RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs

DNA sequence :
ATGCGTCCAAGTAACAGAACGCCAGCACAAACTCGTCCCATCACTATCACTCGCCAGTTTACGGCCCATGCCGAAGGTTC
TGTGTTAGTGGAATTTGGCGAAACGAAAGTGCTTTGTACCGCCAGTTTTACTGAAGGTGTGCCACGTTTCCTTAAAGGTC
AGGGTCAAGGCTGGGTGACGGCAGAGTACGGCATGTTGCCACGTTCGACCCATAGCCGTATGGATCGTGAAGCAGCTCGC
GGTAAGCAATCTGGTCGTACACAAGAAATTCAACGTCTTATCGGTCGTGCGCTGCGCGCCTGTGTGGATATGAAAGCCCT
AGGCGAAAACACTATCGTTATCGATTGTGATGTGATCCAAGCTGATGGTGGCACGCGTACTGCGTCAATCACTGGCGCCT
GTGTGGCCTTAGTGGATGCATTGAACTGGGCACGAGGTAAAGGGATCATTAAATCTAACCCTTTGAAATTCCTTATCGCT
GCCGTTAGCGTAGGTATTTACAAGGGTGAAGCGATAAGCGATCTCGAATATATCGAAGACAGCGCCGCTGAAACTGATAT
GAATGTGGTGATGACAGAAACGGGTAAAATTATTGAAATCCAAGGTACAGCTGAAGGTGAGCCGTTTACTCACGAAGAGT
TGATTGAGCTACTCGGATTGGCGAAGAACAGTATCCGTGAAATCGTCGATGTGCAAAAAGCCGCTTTAAACTAA

Protein sequence :
MRPSNRTPAQTRPITITRQFTAHAEGSVLVEFGETKVLCTASFTEGVPRFLKGQGQGWVTAEYGMLPRSTHSRMDREAAR
GKQSGRTQEIQRLIGRALRACVDMKALGENTIVIDCDVIQADGGTRTASITGACVALVDALNWARGKGIIKSNPLKFLIA
AVSVGIYKGEAISDLEYIEDSAAETDMNVVMTETGKIIEIQGTAEGEPFTHEELIELLGLAKNSIREIVDVQKAALN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
rph YP_001800860.1 ribonuclease PH Not tested Not named Protein 7e-64 58