Gene Information

Name : Sputcn32_3522 (Sputcn32_3522)
Accession : YP_001185030.1
Strain : Shewanella putrefaciens CN-32
Genome accession: NC_009438
Putative virulence/resistance : Virulence
Product : phage transcriptional regulator AlpA
Function : -
COG functional category : K : Transcription
COG ID : COG3311
EC number : -
Position : 4093402 - 4093599 bp
Length : 198 bp
Strand : +
Note : PFAM: Prophage CP4-57 regulatory; KEGG: shm:Shewmr7_1777 phage transcriptional regulator, AlpA

DNA sequence :
ATGAAACTAATTCGCCTTACTAAAGTTATGGATTATACAGGTCTAGCGCGTTCCACTATCTACAAGTACATCGCAGAAGG
AACATTTCCCAAACCGGTGTCACTTGGTAGCCGAGCTGCTGCATGGGTAGAAAGTGAAGTGCAAGAATGGATTTTAACAA
GGATAGAGGAGCGTGATGCCCAAAGTGCAACCGTTTAA

Protein sequence :
MKLIRLTKVMDYTGLARSTIYKYIAEGTFPKPVSLGSRAAAWVESEVQEWILTRIEERDAQSATV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0497 NP_230151.1 transcriptional regulator Not tested VSP-2 Protein 4e-14 57
VC0395_A1406 YP_001217349.1 transcriptional regulator Not tested VPI-2 Protein 6e-13 56
VPI2_0041 ACA01856.1 predicted transcriptional regulator Not tested VPI-2 Protein 4e-13 56
VC1809 NP_231443.1 transcriptional regulator Not tested VPI-2 Protein 6e-13 56
VPI2_0033 AAX20900.1 transcriptional regulator Not tested VPI-2 Protein 5e-11 55
VC1785 NP_231420.1 transcriptional regulator Not tested VPI-2 Protein 7e-11 55
VC0395_A1382 YP_001217325.1 transcriptional regulator Not tested VPI-2 Protein 7e-11 55
unnamed CAB46594.1 DNA-binding protein Not tested HPI Protein 5e-10 46
unnamed CAA21398.1 - Not tested HPI Protein 7e-10 46
PMI2608 YP_002152324.1 prophage regulatory protein Not tested Not named Protein 3e-08 44
Z1188 NP_286723.1 hypothetical protein Not tested TAI Protein 7e-06 44
Z1627 NP_287131.1 hypothetical protein Not tested TAI Protein 7e-06 44
unnamed CAD33739.1 hypothetical protein Not tested PAI I 536 Protein 9e-08 43
c5192 NP_757040.1 hypothetical protein Not tested PAI II CFT073 Protein 1e-07 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sputcn32_3522 YP_001185030.1 phage transcriptional regulator AlpA VFG1141 Protein 2e-13 56
Sputcn32_3522 YP_001185030.1 phage transcriptional regulator AlpA VFG1118 Protein 2e-11 55
Sputcn32_3522 YP_001185030.1 phage transcriptional regulator AlpA VFG1480 Protein 4e-08 43