Gene Information

Name : Sputcn32_3521 (Sputcn32_3521)
Accession : YP_001185029.1
Strain : Shewanella putrefaciens CN-32
Genome accession: NC_009438
Putative virulence/resistance : Virulence
Product : DNA repair protein RadC
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2003
EC number : -
Position : 4092763 - 4093269 bp
Length : 507 bp
Strand : -
Note : PFAM: DNA repair protein RadC; KEGG: shm:Shewmr7_1776 DNA repair protein RadC

DNA sequence : 
ATGTCAACAAAAGCGATGTCCTCCCAATCCGTAAAGCCCCCATTGCTAAACCAACCGATCAACCAGTGGCCGCCCTCGGA
TGACGTCATCCTCGCCTCTGCCGCCAATATCATTGCCGAGCGCTATGTAAAGAAAGACGCCTATACCAATCCACAGGCCA
CTAAGGATTTTTTAACTTACAAACTGGGTGGTTATGAGCGGGAGGTATTTGCAGTGATGCTGCTCGATAATCAGCATCAA
TTACTTGAATTTAAAGAGCTGTTCTTTGGCACTTTAGATGCCGCCAGTGTTTATCCACGGGAGGTAGTTAAGGCTGTGTT
GGCCGTCAATGCCGCAGCGGTGATTTTTGCCCATAACCATCCCTCCGGCGAGTCTGAACCTTCGGCTGCAGATAAGCACA
TCACTCAACGGTTAACCGATGCATTAGCGCTTATCGATGTGCGCGTGCTTGACCATATCGTGGTTGGCCGCACGCCAGTG
TCCTTTGCTGAGCGCGGCTTACTCTAG

Protein sequence : 
MSTKAMSSQSVKPPLLNQPINQWPPSDDVILASAANIIAERYVKKDAYTNPQATKDFLTYKLGGYEREVFAVMLLDNQHQ
LLEFKELFFGTLDAASVYPREVVKAVLAVNAAAVIFAHNHPSGESEPSAADKHITQRLTDALALIDVRVLDHIVVGRTPV
SFAERGLL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0510 NP_230161.1 DNA repair protein RadC-like protein Not tested VSP-2 Protein 5e-39 72
VC1786 NP_231421.1 DNA repair protein RadC Not tested VPI-2 Protein 6e-39 64
VC0395_A1383 YP_001217326.1 DNA repair protein RadC Not tested VPI-2 Protein 6e-39 64
VPI2_0034 ACA01849.1 DNA repair protein RadC Not tested VPI-2 Protein 3e-39 64
radC AAN62140.1 putative DNA repair protein RadC Not tested PAGI-2(C) Protein 1e-23 60
unnamed AAK00479.1 unknown Not tested SHI-1 Protein 3e-21 54
yeeS CAE85201.1 YeeS protein Not tested PAI V 536 Protein 5e-21 54
yeeS NP_838484.1 RADC family DNA repair protein Not tested SHI-1 Protein 6e-21 54
yeeS NP_708770.1 RADC family DNA repair protein Not tested SHI-1 Protein 6e-21 54
z1217 CAD33787.1 Z1217 protein Not tested PAI I 536 Protein 9e-21 53
Z1217 NP_286752.1 RadC family DNA repair protein Not tested TAI Protein 1e-20 53
Z1657 NP_287160.1 RadC family DNA repair protein Not tested TAI Protein 6e-20 53
unnamed CAD42098.1 hypothetical protein Not tested PAI II 536 Protein 6e-21 53
yeeS YP_854323.1 radC-like protein YeeS Not tested PAI I APEC-O1 Protein 2e-20 53
c5152 NP_757000.1 radC-like protein yeeS Not tested PAI II CFT073 Protein 2e-20 53
unnamed CAD66203.1 hypothetical protein Not tested PAI III 536 Protein 5e-21 53
yeeS AAZ04458.1 putative RadC-like protein Not tested PAI I APEC-O1 Protein 1e-20 53
ECO103_3589 YP_003223446.1 radC-like protein YeeS Not tested LEE Protein 2e-20 53
yeeS CAI43901.1 YeeS protein Not tested LEE Protein 5e-21 53
unnamed AAL08475.1 unknown Not tested SRL Protein 8e-21 53
yeeS ADD91702.1 YeeS Not tested PAI-I AL862 Protein 8e-21 53
yeeS CAI43846.1 YeeS protein Not tested LEE Protein 7e-21 53
aec73 AAW51756.1 Aec73 Not tested AGI-3 Protein 6e-21 53
unnamed AAL67345.1 intergenic-region protein Not tested PAI II CFT073 Protein 5e-21 53
radC AAN62275.1 putative DNA repair protein RadC Not tested PAGI-3(SG) Protein 1e-18 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sputcn32_3521 YP_001185029.1 DNA repair protein RadC VFG1119 Protein 2e-39 64
Sputcn32_3521 YP_001185029.1 DNA repair protein RadC VFG0660 Protein 2e-21 54
Sputcn32_3521 YP_001185029.1 DNA repair protein RadC VFG1678 Protein 2e-21 53
Sputcn32_3521 YP_001185029.1 DNA repair protein RadC VFG1528 Protein 4e-21 53
Sputcn32_3521 YP_001185029.1 DNA repair protein RadC VFG1617 Protein 2e-21 53
Sputcn32_3521 YP_001185029.1 DNA repair protein RadC VFG1066 Protein 3e-21 53