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Name : Sputcn32_2527 (Sputcn32_2527) Accession : YP_001184047.1 Strain : Shewanella putrefaciens CN-32 Genome accession: NC_009438 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein CapD Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 2943787 - 2945727 bp Length : 1941 bp Strand : - Note : PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: son:SO3171 polysaccharide biosynthesis protein DNA sequence : ATGGAATTTTTGCAATTTTTATTTTCGTTAACACGATCACAGAAGCGTTTAGTCAGTGTCGCTATCGATTCAGTGTTTTT ACTTTTTGCGTTTTGGTTTGCCCTATTGGTACGCCTTGATTCAATTGAGGTATTAGTCAAACCTCAATATTGGGGGTTGA TAGTCCTGACTATACCTGTGAGTATCGCTGGGTTTGTGAGGCTGGGGCTTTATCGTGCTGTTCTACGTTATATTGGCTCT CAGGCATTTACTGCAATTGTTACTGGTGTATTAATTTCGACTATTACACTTGTTCTACTCGCTTATTACGGTAGTGTAGA TTTACCTCGAACTGTCCCTTTTATCTATGCTGCCTTTGCTTTAGTTTTTGTGGGTGGTGCCAGATCACTTATGCGTTCAT TGGTTGGCGCAGGAATTAATCGTCGTGGTGAGCCTGTGGTGATTTATGGCGCGGGAGTGAGTGGAAGACAAACGGCAATT GCCCTTGCACAGAGTCATGAATACCATCCCATTGCCTTTGTTGATGATGATGAATGCCTGCAAGGTACTGTGATCCAAGG CTTACATGTACATACTCCACAAGTGTTGCATAAATTGATTAAGCAAAAAGCGGCTACCCGTGTGTTGCTTGCAATGCCTA GTGCATCTCGCTCCCGTAGACAAGAGATTATTGCTCAGTTGGAGCCGCTAACTGTTAAAGTTATGACATTACCAGCAATG GCGGATCTTGTTAGTGGTGATAAATTATTTAGTGACGTAAAAGAAGTTGAAATTGAGGATTTACTTGGTCGTGATTCTGT TGCACCTAGACAAAACCTATTAACTGCCAATATTAAAAATAAAGTGGTTATGGTCACGGGGGCGGGAGGATCAATTGGCT CTGAGCTATGTCGGCAAATATTAAAGCAGTCACCCAAAAAATTGGTGTTATTTGAGTTATCAGAATTTGCTTTGTACTCG ATTGAGCGTGAACTTTGCGCAACCGCTGCAGAGCTAGGGCTTGAGCTTGATATTTTACCTATTATGGGGTCGGTGCAGCG TGAGAACCGTGTTCAAGCTGTTATGCAGGCTTTTAAAGTACAAACGGTTTACCATGCTGCTGCTTATAAACATGTGCCTT TAGTTGAACATAACGTCGTTGAAGGTGTACGCAATAATGTATTTGGTACTTTGTATACCGCTAGAGCTGCGATTGCTGCA AAAGTAGAAACCTTTGTTTTAGTGTCTACTGATAAAGCTGTACGTCCCACTAATATTATGGGGACAACCAAGAGAATGGC TGAATTGGCATTACAAGCATTAGCAAAAGAAGAACATCAAACTCGTTTTTGTATGGTGCGTTTTGGTAATGTGCTGGGTT CTTCTGGTTCTGTAGTGCCATTATTCCGTAAACAGATTGCTAACGGCGGCCCAGTTACTGTGACTCACCCAGAAATTACG CGCTTTTTTATGACAATTCCTGAAGCATCCCAGTTGGTCATTCAAGCTGGCGCGATGGGAAAGGGCGGGGATGTATTTGT GCTTGATATGGGTAAATCAGTAAAAATTGTTGATTTAGCCGCAAAAATGATCCGACTAAGTGGTTATGAAGTAAAGGATG AAGATCATCCTAATGGTGATATCGCTATCGAATTTAGTGGATTACGTCCAGGAGAGAAGCTCTATGAGGAATTACTCATA GGTGATGATGTTACTGGTACAGATCATGAACGAATTATGACTGCTCATGAAACATATTTACCTTGGAGTGAGTTAGAGTT GATTTTTAATCGTTTGGATAAAGCTTGTCATGAGTTTAACCATGAGGCGATTCGTGAAATTTTACTTGCAGCACCTACTG GATTTGCCCCAACTGATGGAATTTGTGATTTGGTTTGGCAACAAAAGAAATCATTAAAACCAATCGATGTTAAAGGTAAA GTCGTAACTTTAGTTTCATAG Protein sequence : MEFLQFLFSLTRSQKRLVSVAIDSVFLLFAFWFALLVRLDSIEVLVKPQYWGLIVLTIPVSIAGFVRLGLYRAVLRYIGS QAFTAIVTGVLISTITLVLLAYYGSVDLPRTVPFIYAAFALVFVGGARSLMRSLVGAGINRRGEPVVIYGAGVSGRQTAI ALAQSHEYHPIAFVDDDECLQGTVIQGLHVHTPQVLHKLIKQKAATRVLLAMPSASRSRRQEIIAQLEPLTVKVMTLPAM ADLVSGDKLFSDVKEVEIEDLLGRDSVAPRQNLLTANIKNKVVMVTGAGGSIGSELCRQILKQSPKKLVLFELSEFALYS IERELCATAAELGLELDILPIMGSVQRENRVQAVMQAFKVQTVYHAAAYKHVPLVEHNVVEGVRNNVFGTLYTARAAIAA KVETFVLVSTDKAVRPTNIMGTTKRMAELALQALAKEEHQTRFCMVRFGNVLGSSGSVVPLFRKQIANGGPVTVTHPEIT RFFMTIPEASQLVIQAGAMGKGGDVFVLDMGKSVKIVDLAAKMIRLSGYEVKDEDHPNGDIAIEFSGLRPGEKLYEELLI GDDVTGTDHERIMTAHETYLPWSELELIFNRLDKACHEFNHEAIREILLAAPTGFAPTDGICDLVWQQKKSLKPIDVKGK VVTLVS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 6e-81 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Sputcn32_2527 | YP_001184047.1 | polysaccharide biosynthesis protein CapD | VFG0029 | Protein | 6e-120 | 50 |
| Sputcn32_2527 | YP_001184047.1 | polysaccharide biosynthesis protein CapD | VFG1300 | Protein | 2e-78 | 46 |
