Gene Information

Name : Csac_1529 (Csac_1529)
Accession : YP_001180313.1
Strain : Caldicellulosiruptor saccharolyticus DSM 8903
Genome accession: NC_009437
Putative virulence/resistance : Unknown
Product : hypothetical protein
Function : -
COG functional category : S : Function unknown
COG ID : COG1576
EC number : -
Position : 1690315 - 1690779 bp
Length : 465 bp
Strand : +
Note : PFAM: protein of unknown function DUF163

DNA sequence :
ATGATAAAGGTAATCTGCGTTGGGACAATAAAAGAAAGGTATTTTAAAGAGGCCGCAGAGGAGTATAAAAAACGACTTTC
AAGATGGACAAAAATTGAGGAAATTGAAATAAAAGAAGAAGATGAGAACAAATACCGAAACGTTGAGATGCTTTTAAAAA
AAGAGGCTGAAAAGATACTAAAACACATAAAAGAAGGCCAGTATGTAGTAGTGTTTGATATAAATGGGACTCAGCTAAGC
TCTGAAGAATTTGCAGAATTGTTAGATAGAAAAGTCTCAAAAGGAGAGGAAATAGTATTTGTAATAGGAGGCTCAAATGG
CCTTGCAGATGCTATAAAAAAGAGGGCAAATTTACTAATTTCATTTTCCAAGCTTACTTTCCCTCATCAGCTTTTTAGGA
TTCTTGTGTATGAACAGATATATAGAGGATTTACAATTATTAAAGGAATAAAATACCATAAGTAA

Protein sequence :
MIKVICVGTIKERYFKEAAEEYKKRLSRWTKIEEIEIKEEDENKYRNVEMLLKKEAEKILKHIKEGQYVVVFDINGTQLS
SEEFAELLDRKVSKGEEIVFVIGGSNGLADAIKKRANLLISFSKLTFPHQLFRILVYEQIYRGFTIIKGIKYHK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed BAB72121.1 hypothetical protein Not tested Type-IVa SCCmec Protein 4e-25 44
orfX YP_251938.1 rRNA large subunit methyltransferase Not tested SCCmec Protein 3e-25 44
unnamed BAB72138.1 open reading frame X Not tested Type-IVb SCCmec Protein 4e-25 44
unnamed BAC67575.1 open reading frame X Not tested Type-IVc SCCmec Protein 4e-25 44
unnamed BAA82243.1 orfX Not tested Type-II SCCmec Protein 4e-25 44
unnamed BAD24821.1 conserved hypothetical protein orfX Not tested Type-V SCCmec Protein 4e-25 44
orfX BAA86653.1 open reading frame X Not tested Type-I SCCmec Protein 4e-25 44
unnamed BAG06184.1 conserved hypothetical protein orfX Not tested Type-VII SCCmec Protein 4e-25 44
unnamed BAB47681.1 open reading frame X Not tested Type-III SCCmec Protein 4e-25 44
unnamed BAC53844.1 open reading frame X Not tested SRImec-III and SCCmec-III region Protein 4e-25 44
SAR0024 YP_039501.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 6e-25 44
unnamed BAC57492.1 hypothetical protein Not tested Type-IIIinv SCCmec Protein 4e-25 44
SAV0024 NP_370548.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 6e-25 44
unnamed ACL99851.1 hypothetical protein Not tested Type-V SCCmec Protein 2e-22 44
orfXhom BAB83497.1 open reading frame X Not tested SCC 12263 Protein 4e-22 43
orfX AAL26648.1 unknown Not tested SCCcap1 Protein 2e-24 43
SE0023 NP_763578.1 rRNA large subunit methyltransferase Not tested SCCpbp4 Protein 5e-24 43
SERP2529 YP_190070.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 5e-24 43
SSP0026 YP_300116.1 rRNA large subunit methyltransferase Not tested SCC15305RM Protein 1e-23 41