Gene Information

Name : Ent638_0463 (Ent638_0463)
Accession : YP_001175202.1
Strain : Enterobacter sp. 638
Genome accession: NC_009436
Putative virulence/resistance : Unknown
Product : phage integrase family protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 523760 - 525022 bp
Length : 1263 bp
Strand : +
Note : PFAM: phage integrase family protein; KEGG: eci:UTI89_C4878 prophage P4 integrase

DNA sequence :
ATGGCGTTAACAGATATCAAAGTCAGAACAGCTAAGCCAACGGACAAGCAATATAAGCTGACCGATAGCAACGGTATGCA
TCTTCTCGTCCACCCAAATGGTTCAAGGTACTGGCGTCTGCAGTACCGCTTTGGCGGGAAGCAAAAGATGCTGGCTTTAG
GCGTTTATCCTGATGTGTCTCTTGCAGATGCCAGAGCTCGTCGTGATGAGGCTCGTAAGCTGTTGGCAAACAGCATCGAT
CCGGGAGACAAAAAGAAAAATGATAAGGTTGAGCAGGAAGAAGCGCGTACTTTCGAACAGCTCGCTGTTGAATGGCATGC
CACAAATAAAAAGTGGTCGGAAGAACATAGCCGACGTGTACTGAAAAGCTTGGAAGACAACCTCTTTCCTGCCATTGGTA
AACGCAACATTGCCGAGTTAAAAACTCGTGATTTATTAGCACCCATTAAAGCCGTAGAGATGTCTGGACGTCTTGAGGTT
GCTGCCCGTCTTCAACAGCGCACTACGGCCATCATGCGTTATGCAGTGCAAAGTGGATTAATTGATTATAACCCGGCACA
AGAGATGGCTGGGGCGGTTGCTTCCAGTAATCGACAACATCGTCCGGCGCTGGAATTAAAGCGAATCCCTGAGTTACTTG
AGAAAATAGACAGCTATACCGGCAGGCCACTTACCCGCTGGGCGACAGAACTCACTCTGCTTATCTTTATTCGATCTAGT
GAGCTCCGTTTTGCTCGCTGGTCAGAGATCGATTTTGAAACGTCAATGTGGACGATCCCACCAGAACGAGAGCCTATTCC
CGGCGTGAAACATTCTCACCGAGGCTCAAAAATGCGCACGCCGCATCTGGTACCGCTTTCAAAGCAGGCGCTGGAGATCC
TGAGGCAAATAAAACATTTTTGCGGGGAATACGAACTGATTTTTATTGGCGATCACGACCCGCGTAAACCCATGAGTGAG
AACACGGTGAACAGTGCGCTGCGGGTAATGGGTTATGACACTAAAGTCGAAGTCTGTGGTCATGGCTTTCGCACAATGGC
CTGTAGTTCTTTGATTGAGTCAGGTCTATGGTCCAAAGATGCGGTCGAACGCCAGATGAGCCATATGGAACGCAATTCGG
TGAGGGCGGCGTATATCCATAAAGCGGAACATCTGGATGAGCGCAAGCTGATGTTGCAGTGGTGGGCTGATTTTCTGGAT
GCTAACCGGGAGAAGGGGATTACGCCGTTTGACTATGCAAAGATCAATCGGGGTAATATTTAG

Protein sequence :
MALTDIKVRTAKPTDKQYKLTDSNGMHLLVHPNGSRYWRLQYRFGGKQKMLALGVYPDVSLADARARRDEARKLLANSID
PGDKKKNDKVEQEEARTFEQLAVEWHATNKKWSEEHSRRVLKSLEDNLFPAIGKRNIAELKTRDLLAPIKAVEMSGRLEV
AARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASSNRQHRPALELKRIPELLEKIDSYTGRPLTRWATELTLLIFIRSS
ELRFARWSEIDFETSMWTIPPEREPIPGVKHSHRGSKMRTPHLVPLSKQALEILRQIKHFCGEYELIFIGDHDPRKPMSE
NTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSKDAVERQMSHMERNSVRAAYIHKAEHLDERKLMLQWWADFLD
ANREKGITPFDYAKINRGNI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 9e-169 90
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 1e-143 70
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 6e-144 70
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 3e-144 70
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 3e-144 70
int AAK00456.1 Int Not tested SHI-1 Protein 2e-134 70
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 1e-143 70
int AAK16198.1 Int Not tested PAI-I AL862 Protein 7e-143 70
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 7e-143 70
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 4e-142 69
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 4e-142 69
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 3e-142 69
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 4e-142 69
int AAL51028.1 CP4-like integrase Not tested LEE Protein 3e-142 69
int-phe AAL60261.1 Int-phe Not tested LEE Protein 3e-142 69
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 9e-143 69
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 1e-140 69
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 1e-141 69
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 5e-142 69
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 5e-142 69
int AAL51003.1 CP4-like integrase Not tested LEE Protein 3e-142 69
int CAC81896.1 integrase Not tested LEE II Protein 3e-132 68
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 8e-129 63
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 8e-129 63
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 5e-115 59
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 5e-84 57
int CAA08754.1 integrase Not tested HPI Protein 1e-111 57
int CAB59974.1 integrase Not tested HPI Protein 3e-112 57
int CAA21384.1 - Not tested HPI Protein 4e-111 56
int YP_002346908.1 integrase Not tested HPI Protein 4e-111 56
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 4e-111 56
int2 NP_993013.1 integrase Not tested HPI Protein 4e-111 56
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 3e-96 56
unnamed AAD17660.1 unknown Not tested HPI Protein 1e-107 55
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 2e-111 54
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 2e-111 54
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 3e-102 52
int AAD44730.1 Int Not tested SHI-2 Protein 3e-83 45
aec33 AAW51716.1 Int Not tested AGI-3 Protein 8e-84 45
int CAC39282.1 integrase Not tested LPA Protein 7e-84 45
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 2e-77 44
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 1e-81 44
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 1e-81 44
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 8e-82 44
int AAC31482.1 CP4-like integrase Not tested LEE Protein 5e-82 43
int ACU09430.1 integrase Not tested LEE Protein 5e-82 43
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 7e-82 43
ECs4534 NP_312561.1 integrase Not tested LEE Protein 7e-82 43
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 4e-75 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ent638_0463 YP_001175202.1 phage integrase family protein VFG1536 Protein 5e-169 90
Ent638_0463 YP_001175202.1 phage integrase family protein VFG0626 Protein 1e-144 70
Ent638_0463 YP_001175202.1 phage integrase family protein VFG1693 Protein 2e-142 69
Ent638_0463 YP_001175202.1 phage integrase family protein VFG0598 Protein 5e-82 44
Ent638_0463 YP_001175202.1 phage integrase family protein VFG0783 Protein 3e-82 43