Gene Information

Name : Ent638_2887 (Ent638_2887)
Accession : YP_001177603.1
Strain : Enterobacter sp. 638
Genome accession: NC_009436
Putative virulence/resistance : Unknown
Product : phage integrase family protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 3125655 - 3126905 bp
Length : 1251 bp
Strand : +
Note : PFAM: phage integrase family protein; KEGG: ecp:ECP_4521 prophage P4 integrase

DNA sequence : 
ATGGCACTAACTGATGTGAAAGTTAGAAATGCGAAACCTGCTGACAAGCCCGTCAAGCTTACTGATGGAAACGGTATGCA
TCTCCTCGTTCAGCCTTCGGGTTCAAAATACTGGAGGCTTCAATATCGCTTTTCTGGTAAGCAAAAAATGTTGGCTCTTG
GTGTTTATCCTGAAGTATCTTTATCAGAAGCTCGTCGCAGACGAGAAGAAGCAAGACAACTTATTGCCAATAATGTTGAT
CCTGGTGAGAAGCGAAAAACAAAAAAGATTGAAGAGAAAGGCTTGCTCATTTTTGAAACTGTTGCCAGAGACTGGCATTC
AAGCAACAGGACATGGTCAGACAGCCATCGAAAAACGGTTTTGAGTAGCTTGATCACCCATGTCTTTCCTGTAATAGGTA
AGCGAAACATTACTGAACTAAAAACCCGTGATTTATTAGTTCCCCTGAAAAAAGCAGAAGCCACCGGGCATCTGGAACTT
GCGGCACGCTTACAGCAAAGAATCACAGCAATTATGCGGTATGCAGTTCACAATGCTTTGGTTGACCAAAACCCAGCTTA
CGACCTCACAGGTGCTGTAACCACTGCCAAGAGCAATCACCGCCCTGCCCTTCCTCTTGAACAACTCCCTGAGCTTTTGA
AAAGGATTGGTACATATAAAGGTAAAGGAATCACCCAAATAGCAGTTCAATTGACTCTACTGACTTTTATCCGGTCAAGT
GAACTAAGATTCGCTCGTTGGTCTGAGGTGAATTTCAAAAACTCCTTATGGACAATCCCTGCTGAAAGACAAGTACTGGA
TGGAGTTAAGTACTCAGGCAGGGGCTCAAAAATGAAAACTCCTCATCTGGTGCCACTCAGCAAGCAGGCAGTAGTATTGC
TTAAAAAGCTCCACGCGATAAGTGGAGAAAATGAGCTAATGTTCGTTGGGTTTAGTCGTGATGACAAACCCATAAGTGAG
AACACCGTTAACAAAGCTCTTCGGACGATGGGCTACGATACAAAAAAAGACGTGTGTGGACATGGATTCAGGACAATGGC
ATGTAGTGCCCTTATTGAGTCAGGTCTGTGGTCAAGAGATGCTGTGGAAAAGCAAATGAGTCACCAAGAGCGGAACTCCG
TTCGAGCAGCTTACATTCATAAAGCAGAACATCTTGAAGAGCGAAAGTTGATGCTCCAATGGTGGGCTAACTATCTTGAT
ACATGTAAAGAAGAAGCTATTACACCATTTACTTATGCAGTCCAATCATAG

Protein sequence : 
MALTDVKVRNAKPADKPVKLTDGNGMHLLVQPSGSKYWRLQYRFSGKQKMLALGVYPEVSLSEARRRREEARQLIANNVD
PGEKRKTKKIEEKGLLIFETVARDWHSSNRTWSDSHRKTVLSSLITHVFPVIGKRNITELKTRDLLVPLKKAEATGHLEL
AARLQQRITAIMRYAVHNALVDQNPAYDLTGAVTTAKSNHRPALPLEQLPELLKRIGTYKGKGITQIAVQLTLLTFIRSS
ELRFARWSEVNFKNSLWTIPAERQVLDGVKYSGRGSKMKTPHLVPLSKQAVVLLKKLHAISGENELMFVGFSRDDKPISE
NTVNKALRTMGYDTKKDVCGHGFRTMACSALIESGLWSRDAVEKQMSHQERNSVRAAYIHKAEHLEERKLMLQWWANYLD
TCKEEAITPFTYAVQS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 2e-130 67
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 1e-130 67
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 2e-130 67
int AAL51028.1 CP4-like integrase Not tested LEE Protein 3e-130 67
int-phe AAL60261.1 Int-phe Not tested LEE Protein 3e-130 67
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 2e-129 67
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 2e-129 67
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 5e-130 67
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 3e-130 67
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 5e-130 67
int CAC81896.1 integrase Not tested LEE II Protein 3e-121 67
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 5e-128 66
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 2e-129 66
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 2e-129 66
int AAK00456.1 Int Not tested SHI-1 Protein 7e-121 66
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 6e-128 66
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 6e-129 66
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 6e-129 66
int AAL51003.1 CP4-like integrase Not tested LEE Protein 5e-129 66
int AAK16198.1 Int Not tested PAI-I AL862 Protein 2e-129 66
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 2e-129 66
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 6e-122 64
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 9e-119 61
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 9e-119 61
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 1e-80 57
int CAA08754.1 integrase Not tested HPI Protein 1e-109 57
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 7e-110 56
int YP_002346908.1 integrase Not tested HPI Protein 3e-109 56
int CAB59974.1 integrase Not tested HPI Protein 6e-110 56
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 3e-109 56
int2 NP_993013.1 integrase Not tested HPI Protein 3e-109 56
int CAA21384.1 - Not tested HPI Protein 3e-109 56
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 2e-90 56
unnamed AAD17660.1 unknown Not tested HPI Protein 4e-106 55
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 6e-101 53
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 6e-101 53
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 4e-94 51
int AAD44730.1 Int Not tested SHI-2 Protein 2e-76 44
int CAC39282.1 integrase Not tested LPA Protein 4e-77 44
aec33 AAW51716.1 Int Not tested AGI-3 Protein 4e-77 44
int AAC31482.1 CP4-like integrase Not tested LEE Protein 4e-75 43
int ACU09430.1 integrase Not tested LEE Protein 4e-75 43
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 5e-75 43
ECs4534 NP_312561.1 integrase Not tested LEE Protein 5e-75 43
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 6e-75 43
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 8e-75 43
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 8e-75 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ent638_2887 YP_001177603.1 phage integrase family protein VFG1693 Protein 7e-130 67
Ent638_2887 YP_001177603.1 phage integrase family protein VFG0626 Protein 8e-130 66
Ent638_2887 YP_001177603.1 phage integrase family protein VFG1536 Protein 4e-122 64
Ent638_2887 YP_001177603.1 phage integrase family protein VFG0783 Protein 2e-75 43
Ent638_2887 YP_001177603.1 phage integrase family protein VFG0598 Protein 3e-75 43